Hello, Hiro. We are currently having hardware problems on our MySQL server and are working to resolve them.
In the meantime, you can use our download server (http://hgdownload.cse.ucsc.edu/downloads.html) or FTP server (ftp://hgdownload.cse.ucsc.edu/goldenPath) to download whole tables or you can use our Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables) to download specific information from the tables. If you're unfamiliar with the Table Browser, please see the User's Guide at http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html. If you still have questions about how to look up specific information, please let us know. Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of MISHIMA, Hiroyuki Sent: Wednesday, June 27, 2012 3:42 PM To: [email protected] Subject: [Genome] Official MySQL server trouble with 'hg19' database Dear UCSC Genome Bioinformatics Group, The 'hg19' database in the official MySQL server seems to have some trouble. Access to the hg19 (not hg18) returns an error "Got error 28 from storage engine". The following is a log of manual access to the server. --- $ mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A Welcome to the MySQL monitor. Commands end with ; or \g. Your MySQL connection id is 32844 Server version: 5.0.45 Source distribution Copyright (c) 2000, 2011, Oracle and/or its affiliates. All rights reserved. Oracle is a registered trademark of Oracle Corporation and/or its affiliates. Other names may be trademarks of their respective owners. Type 'help;' or '\h' for help. Type '\c' to clear the current input statement. mysql> use hg19; Database changed mysql> show tables; ERROR 1030 (HY000): Got error 28 from storage engine mysql> use hg18; Database changed mysql> show tables; <...LIST OF TABLES..> --- Hopefully, this will help server administration. Sincerely yours, Hiro. -- MISHIMA, Hiroyuki, DDS, Ph.D. Assistant Professor Department of Human Genetics Nagasaki University Graduate School of Biomedical Sciences _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
