The html should be content only, the <head> and <body> tags are supplied by the page pulling up the "track description". So, you should not be making a complete html document.
On 7/5/12 9:52 AM, Luvina Guruvadoo wrote: > Hi Amadis, > > You should use HTML 4.01 transitional syntax to generate these HTML > pages. You can view examples of track description pages within the > Genome Browser by clicking on the mini-button to the left of the > displayed track. > > Please contact us again at [email protected] if you have any further > questions. > > --- > Luvina Guruvadoo > UCSC Genome Bioinformatics Group > > > On 7/5/2012 7:30 AM, Amadis Pages wrote: >> I'm right now in the process of creating a Track Hub in order to display >> some ChIP-Seq data. >> >> I've been following your guide in >> http://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html, which has been >> really useful for me, but I got stuck at "*Section 8: Create track >> description files*". Apparently, I need to create an HTML file for each one >> of the tracks listed within the *trackDb.txt* file. >> >> The point is that I haven't been able to find any documentation about those >> HTML files. Could you please help me on this? I will really appreciate, if >> possible, to take a look at the code of one of those HTML files. >> >> Thanks a lot in advance. >> >> Best regards, >> >> Amad=EDs Pag=E8s >> Regulatory Genomics - Computational Genomics >> Universitat Pompeu Fabra (UPF) >> Barcelona - Spain >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> Return-Path: [email protected] >> Received: from mail-01.cse.ucsc.edu (LHLO mail-01.cse.ucsc.edu) >> (128.114.48.32) by mail-01.cse.ucsc.edu with LMTP; Sun, 1 Jul 2012 >> 22:31:03 >> -0700 (PDT) >> Received: from mailin-1.soe.ucsc.edu (mailin-1.soe.ucsc.edu [128.114.49.19]) >> by mail-01.cse.ucsc.edu (Postfix) with ESMTPS id 203001009D4B >> for<[email protected]>; Sun, 1 Jul 2012 22:31:03 -0700 (PDT) >> Received: from mailgw.soe.ucsc.edu (mailgw.cse.ucsc.edu [128.114.48.9]) >> by mailin-1.soe.ucsc.edu (8.13.8/8.13.8) with ESMTP id q625STN2029244 >> (version=TLSv1/SSLv3 cipher=DHE-RSA-AES256-SHA bits=256 verify=OK) >> for<[email protected]>; Sun, 1 Jul 2012 22:28:30 -0700 >> X-ASG-Debug-ID: 1341207068-03cafc0f8a5d9320001-H1ttPa >> Received: from mail-pb0-f71.google.com (mail-pb0-f71.google.com >> [209.85.160.71]) by mailgw.soe.ucsc.edu with ESMTP id yd81BYxjLoiEcSlQ >> (version=TLSv1 cipher=RC4-SHA bits=128 verify=NO) for<[email protected]>; >> Sun, 01 Jul 2012 22:31:09 -0700 (PDT) >> X-Barracuda-Envelope-From: >> [email protected] >> X-Barracuda-Apparent-Source-IP: 209.85.160.71 >> Received-SPF: pass (mailgw.soe.ucsc.edu: domain of soe.ucsc.edu designates >> 209.85.160.71 as permitted sender) client-ip=209.85.160.71; >> envelope-from=genome-www+bnccnxyqejmgxcc5mt_bboensa...@soe.ucsc.edu; >> Received: by pbbrr13 with SMTP id rr13sf11395250pbb.10 >> for<[email protected]>; Sun, 01 Jul 2012 22:31:08 -0700 (PDT) >> DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; >> d=ucsc.edu; s=ucsc-google; >> h=sender:x-beenthere:received-spf:x-asg-debug-id >> :x-barracuda-envelope-from:x-barracuda-apparent-source-ip >> :received-spf:mime-version:date:message-id:subject:from >> :x-asg-orig-subj:to:x-barracuda-connect:x-barracuda-start-time >> :x-barracuda-encrypted:x-barracuda-url:x-virus-scanned >> :x-original-sender:x-original-authentication-results:precedence >> :mailing-list:list-id:x-google-group-id:list-post:list-help >> :list-archive:list-unsubscribe:content-type; >> bh=hvYgkgWMetf/QBHZB6dGExNvtdpURLnUhSEzxjhp/D4=; >> >> b=jUSTVbaC6++hd4EQe+oExOwC4ZvtUDdMej+7QF/CtqhYw5XyRv9XaMWgIR3WIYTwS5 >> >> H4VfZQ0m3vxmd7TbdF2FcZIhFpYXo8o+EAltdYlf0x+CSV/ZJ5t0NnSPGOarQG2UbcAv >> fQdr3jONIHiR8Iq0XQpMSEsKkuU1WmZWO2C/Y= >> Sender: [email protected] >> Received: by 10.68.219.170 with SMTP id pp10mr9508369pbc.1.1341207068766; >> Sun, 01 Jul 2012 22:31:08 -0700 (PDT) >> X-BeenThere: [email protected] >> Received: by 10.68.233.8 with SMTP id ts8ls18740138pbc.7.gmail; Sun, 01 Jul >> 2012 22:31:08 -0700 (PDT) >> Received: by 10.68.221.106 with SMTP id qd10mr27549832pbc.42.1341207068327; >> Sun, 01 Jul 2012 22:31:08 -0700 (PDT) >> Received: by 10.68.221.106 with SMTP id qd10mr27549828pbc.42.1341207068314; >> Sun, 01 Jul 2012 22:31:08 -0700 (PDT) >> Received: from mailin-1.soe.ucsc.edu (mailin-1.soe.ucsc.edu. [128.114.49.19]) >> by mx.google.com with ESMTPS id >> qd2si19862080pbb.327.2012.07.01.22.31.08 >> (version=TLSv1/SSLv3 cipher=OTHER); >> Sun, 01 Jul 2012 22:31:08 -0700 (PDT) >> Received-SPF: neutral (google.com: 128.114.49.19 is neither permitted nor >> denied by domain of [email protected]) client-ip=128.114.49.19; >> Received: from mailgw.soe.ucsc.edu (mailgw.cse.ucsc.edu [128.114.48.9]) >> by mailin-1.soe.ucsc.edu (8.13.8/8.13.8) with ESMTP id q625SPg3029199 >> (version=TLSv1/SSLv3 cipher=DHE-RSA-AES256-SHA bits=256 verify=OK) >> for<[email protected]>; Sun, 1 Jul 2012 22:28:25 -0700 >> Received: from mail-pb0-f43.google.com (mail-pb0-f43.google.com >> [209.85.160.43]) by mailgw.soe.ucsc.edu with ESMTP id UJ6gitFKByqgdrbi >> (version=TLSv1 cipher=RC4-SHA bits=128 verify=NO) >> for<[email protected]>; Sun, 01 Jul 2012 22:31:07 -0700 (PDT) >> Received-SPF: pass (mailgw.soe.ucsc.edu: domain of gmail.com designates >> 209.85.160.43 as permitted sender) client-ip=209.85.160.43; >> [email protected]; >> Received: by mail-pb0-f43.google.com with SMTP id wz7so12416404pbc.16 >> for<[email protected]>; Sun, 01 Jul 2012 22:31:07 -0700 (PDT) >> MIME-Version: 1.0 >> Received: by 10.66.72.233 with SMTP id g9mr18791695pav.29.1341207067034; Sun, >> 01 Jul 2012 22:31:07 -0700 (PDT) >> Received: by 10.66.14.137 with HTTP; Sun, 1 Jul 2012 22:31:06 -0700 (PDT) >> Date: Sun, 1 Jul 2012 22:31:06 -0700 >> Message-ID:<CAGNSVWHTRVCGfaYiyv0VqdMrx=imu1f=ubej0sus+bqfkn3...@mail.gmail.com> >> Subject: Problem with URL Query from python >> From: Blake Allen<[email protected]> >> X-ASG-Orig-Subj: Problem with URL Query from python >> To: [email protected] >> X-Virus-Scanned: by bsmtpd at soe.ucsc.edu >> X-Original-Sender: [email protected] >> X-Original-Authentication-Results: mx.google.com; spf=neutral (google.com: >> 128.114.49.19 is neither permitted nor denied by domain of >> [email protected]) [email protected]; dkim=pass >> [email protected] >> Precedence: list >> Mailing-list: list [email protected]; contact >> [email protected] >> List-ID:<genome-www.soe.ucsc.edu> >> X-Google-Group-Id: 297403127346 >> List-Post:<http://groups.google.com/a/soe.ucsc.edu/group/genome-www/post?hl=en_US>, >> <mailto:[email protected]> >> List-Help:<http://support.google.com/a/soe.ucsc.edu/bin/topic.py?hl=en_US&topic=25838>, >> <mailto:[email protected]> >> List-Archive:<http://groups.google.com/a/soe.ucsc.edu/group/genome-www/?hl=en_US> >> List-Unsubscribe:<http://groups.google.com/a/soe.ucsc.edu/group/genome-www/subscribe?hl=en_US>, >> <mailto:[email protected]> >> Content-Type: multipart/alternative; boundary=f46d042f9484cd05d704c3d21ab2 >> X-Barracuda-Connect: mail-pb0-f71.google.com[209.85.160.71] >> X-Barracuda-Start-Time: 1341207069 >> X-Barracuda-Encrypted: RC4-SHA >> X-Barracuda-URL: http://mailgw.cse.ucsc.edu:8000/cgi-mod/mark.cgi >> X-Virus-Scanned: by bsmtpd at soe.ucsc.edu >> X-Barracuda-Spam-Score: 0.00 >> X-Barracuda-Spam-Status: No, SCORE=0.00 using global scores of TAG_LEVEL=3.5 >> QUARANTINE_LEVEL=5.0 KILL_LEVEL=6.0 tests=BSF_SC0_MISMATCH_TO, HTML_MESSAGE >> X-Barracuda-Spam-Report: Code version 3.2, rules version 3.2.2.101516 >> Rule breakdown below >> pts rule name description >> ---- ---------------------- >> -------------------------------------------------- >> 0.00 BSF_SC0_MISMATCH_TO Envelope rcpt doesn't match header >> 0.00 HTML_MESSAGE BODY: HTML included in message >> >> --f46d042f9484cd05d704c3d21ab2 >> Content-Type: text/plain; charset=ISO-8859-1 >> Content-Transfer-Encoding: quoted-printable >> >> Hi, >> >> My name is Blake, I am a university of California Santa Cruz undergrad, and >> while doing a remote url query to access a sequence, I got the >> error: hashMustFindVal: 'c' not found >> >> When I manually copy and paste the url into the browser, I get the correct >> sequence, here is that URL: >> http://genome.ucsc.edu/cgi-bin/hgc?hgsid=3D0&g=3DhtcGetDna2&table=3D&i=3Dmi= >> xed&o=3D41521206&l=3D41521206&r=3D41521476&getDnaPos=3Dchr20:41,521,206-41,= >> 521,476&db=3Dhg18&hgSeq.cdsExon=3D1&hgSeq.padding5=3D0&hgSeq.padding3=3D0&h= >> gSeq.casing=3Dlower&boolshad.hgSeq.maskRepeats=3D0&hgSeq.repMasking=3Dlower= >> &boolshad.hgSeq.revComp=3D0&submit=3Dget+DNA >> >> >> I tried using python's urllib2, httplib. I also attempted the same in >> Terminal via curl. >> I also tried this on different computers, but I still recieved this early >> error. >> >> Does anyone have any thoughts on what I might be missing in order to >> correctly getDNA from the browser? >> >> Thank you for your help. >> >> //------------------------------------------------ >> P.S. This is the html that was returned instead of the sequence: >> >> !DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" " >> http://www.w3.org/TR/html4/loose.dtd";><HTML><HEAD> >> <TITLE>Early Error</TITLE> >> <META http-equiv=3D"Content-Script-Type" content=3D"text/javascript"> >> <STYLE TYPE=3D"text/css">.hiddenText {background-color: silver}.normalText >> {background-color: white}</STYLE> >> </HEAD> >> >> <BODY> >> <script type=3D'text/javascript'> >> document.write("<center><div id=3D'warnBox' style=3D'display:none; >> background-color:Beige; border: 3px ridge DarkRed; width:640px; >> padding:10px; margin:10px; text-align:left;'><CENTER><B id=3D'warnHead' >> style=3D'color:DarkRed;'></B></CENTER><UL id=3D'warnList'></UL><CENTER><but= >> ton >> id=3D'warnOK' onclick=3D'hideWarnBox();return >> false;'></button></CENTER></div></center>"); >> function showWarnBox() >> {document.getElementById('warnOK').innerHTML=3D' OK ';var >> warnBox=3Ddocument.getElementById('warnBox');warnBox.style.display=3D''; >> warnBox.style.width=3D'65%';document.getElementById('warnHead').innerHTML= >> =3D'Warning/Error(s):';window.scrollTo(0, >> 0);} >> function hideWarnBox() {var >> warnBox=3Ddocument.getElementById('warnBox');warnBox.style.display=3D'none'= >> ;warnBox.innerHTML=3D'';var >> endOfPage =3D >> document.body.innerHTML.substr(document.body.innerHTML.length-20);if(endOfP= >> age.lastIndexOf('-- >> ERROR --')> 0) { history.back(); }} >> window.onunload =3D function(){}; // Trick to avoid FF back button issue. >> </script> >> <!-- HGERROR-START --> >> <P>hashMustFindVal: 'c' not found</P> >> <!-- HGERROR-END --> >> >> >> >> --=20 >> Blake Allen >> Blakedallen.com >> >> --f46d042f9484cd05d704c3d21ab2 >> Content-Type: text/html; charset=ISO-8859-1 >> Content-Transfer-Encoding: quoted-printable >> >> Hi,=A0<div><br></div><div>My name is Blake, I am a university of California= >> Santa Cruz undergrad, and while doing a remote url query to access a >> seque= >> nce, I got the error:=A0hashMustFindVal:'c' not found</div><div><b= >> r> >> </div><div>When I manually copy and paste the url into the browser, I get t= >> he correct sequence, here is that URL:=A0</div><div><div><a href=3D"http://= >> genome.ucsc.edu/cgi-bin/hgc?hgsid=3D0&g=3DhtcGetDna2&table=3D&i= >> =3Dmixed&o=3D41521206&l=3D41521206&r=3D41521476&getDnaPos= >> =3Dchr20:41,521,206-41,521,476&db=3Dhg18&hgSeq.cdsExon=3D1&hgSe= >> q.padding5=3D0&hgSeq.padding3=3D0&hgSeq.casing=3Dlower&boolshad= >> .hgSeq.maskRepeats=3D0&hgSeq.repMasking=3Dlower&boolshad.hgSeq.revC= >> omp=3D0&submit=3Dget+DNA">http://genome.ucsc.edu/cgi-bin/hgc?hgsid=3D0&= >> amp;g=3DhtcGetDna2&table=3D&i=3Dmixed&o=3D41521206&l=3D4152= >> 1206&r=3D41521476&getDnaPos=3Dchr20:41,521,206-41,521,476&db=3D= >> hg18&hgSeq.cdsExon=3D1&hgSeq.padding5=3D0&hgSeq.padding3=3D0&am= >> p;hgSeq.casing=3Dlower&boolshad.hgSeq.maskRepeats=3D0&hgSeq.repMask= >> ing=3Dlower&boolshad.hgSeq.revComp=3D0&submit=3Dget+DNA</a></div> >> <div><br></div><div><br></div><div>I tried using python's urllib2, http= >> lib. I also attempted the same in Terminal via curl.=A0</div><div>I also tr= >> ied this on different computers, but I still recieved this early error.=A0<= >> /div> >> <div><br></div><div>Does anyone have any thoughts on what I might be missin= >> g in order to correctly getDNA from the browser?=A0</div><div><br></div><di= >> v>Thank you for your help.=A0</div><div><br></div><div>//------------------= >> ------------------------------</div> >> <div>P.S. =A0This is the html that was returned instead of the sequence:=A0= >> </div><div><br></div><div><div>!DOCTYPE HTML PUBLIC"-//W3C//DTD HTML = >> 4.01 Transitional//EN""<a href=3D"http://www.w3.org/TR/html4/loo= >> se.dtd">http://www.w3.org/TR/html4/loose.dtd</a>"><HTML><H= >> EAD></div> >> <div><TITLE>Early Error</TITLE></div><div><span class=3D"Apple-= >> tab-span" style=3D"white-space:pre"> </span><META http-equiv=3D"Con= >> tent-Script-Type" content=3D"text/javascript"></div><div>= >> <STYLE TYPE=3D"text/css">.hiddenText {background-color: sil= >> ver}.normalText {background-color: white}</STYLE></div> >> <div></HEAD></div><div><br></div><div><BODY></div><div><scri= >> pt type=3D'text/javascript'></div><div>document.write("<= >> center><div id=3D'warnBox' style=3D'display:none; backgro= >> und-color:Beige; border: 3px ridge DarkRed; width:640px; padding:10px; marg= >> in:10px; text-align:left;'><CENTER><B id=3D'warnHead= >> 9; style=3D'color:DarkRed;'></B></CENTER><UL id= >> =3D'warnList'></UL><CENTER><button id=3D'warn= >> OK' onclick=3D'hideWarnBox();return false;'></button>&= >> lt;/CENTER></div></center>");</div> >> <div>function showWarnBox() {document.getElementById('warnOK').inne= >> rHTML=3D'&nbsp;OK&nbsp;';var warnBox=3Ddocument.getElementB= >> yId('warnBox');warnBox.style.display=3D''; warnBox.style.wi= >> dth=3D'65%';document.getElementById('warnHead').innerHTML= >> =3D'Warning/Error(s):';window.scrollTo(0, 0);}</div> >> <div>function hideWarnBox() {var warnBox=3Ddocument.getElementById('war= >> nBox');warnBox.style.display=3D'none';warnBox.innerHTML=3D'= >> ';var endOfPage =3D document.body.innerHTML.substr(document.body.innerH= >> TML.length-20);if(endOfPage.lastIndexOf('-- ERROR --')> 0) { hi= >> story.back(); }}</div> >> <div>window.onunload =3D function(){}; // Trick to avoid FF back button iss= >> ue.</div><div></script></div><div><!-- HGERROR-START --></div><= >> div><P>hashMustFindVal:'c' not found</P></div><div><= >> ;!-- HGERROR-END --></div> >> </div><div><br></div><div><br></div><div><br></div>-- <br>Blake Allen<br>Bl= >> akedallen.com<br> >> </div> >> >> --f46d042f9484cd05d704c3d21ab2-- > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
