Hello Sohini, This Blat FAQ should have the information you are looking for:
http://genome.ucsc.edu/FAQ/FAQblat.html#blat4 If you have further questions or require clarification feel free to contact the mailing list at [email protected]. Regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 7/10/12 8:16 AM, sohini wrote: > Hello, > I am aligning a set of cDNAs to Refseq sequences and I want to > calculate > percentage sequence identity of the aligned matches from the psl output.I want > to get the percent id from psl output like the percent id given in webBLAT > output.Please reply soon. > Regards- > Sohini Chakraborty > CSIR-Junior Research Fellow > CoE in Bioinformatics > Bose Institute > DST, Govt. of India > > -- > Open WebMail Project (http://openwebmail.org) > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
