Hi Tian, GSM361998 is actually mapped to the mm8 mouse assembly. Perhaps you were trying to upload the custom track on mm9/10? The would definitely explain the error. Select mm8 from the Gateway page (http://genome.ucsc.edu/cgi-bin/hgGateway) and see if that works.
Please let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 7/23/12 5:05 PM, tian chi wrote: > Re: [Genome] <no subject> * Hi Greg, > Just found I could not upload a BED file either. The file name is > GSM361998, from the following site: > > http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM361998 > > I tried to upload, and got the following error message: > > Error File 'GSM361998.bed' - Error line 662 of custom track: chromEnd > larger than chrom chr2 size (181847110 > 181748087) > > I also got such a message when loading with another file. So it seems > your program is acting up. > > Thanks > Tian > * > > ------------------------------------------------------------------------ > *From: *Greg Roe <[email protected]> > *Date: *Mon, 23 Jul 2012 16:51:48 -0700 > *To: *tian chi <[email protected]> > *Cc: *<[email protected]> > *Subject: *Re: [Genome] <no subject> > > Hi Tian, > > > > That is a bigBed file. We tested from here using NCBI link (via > bigDataUrl), but got a byte-range request error, so NCBI apparently > don't support doing that. > > > You will have to download the file and figure out where to host it > yourself to create the custom track. > > > Please let us know if you have any additional questions: > [email protected] > > - > Greg Roe > UCSC Genome Bioinformatics Group > > > > > On 7/23/12 12:47 PM, tian chi wrote: > > > > Hi, > I have a problem adding a custom track. The data (in bb format) > are located > below: > > http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM774289 > > I downloaded the data into my computer. When I tried to upload it > to the Add > Custom Tracks page, I got an error message saying " can not read > the bb > file". > > Pls help out! > > Thanks a lot > Tian > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
