>> >> >> >> From: Greg Roe <[email protected]> <mailto:[email protected]> >> Date: Tue, 24 Jul 2012 11:54:42 -0700 >> To: tian chi <[email protected]> <mailto:[email protected]> , >> "[email protected]" <mailto:[email protected]> <[email protected]> >> <mailto:[email protected]> >> Subject: Re: [Genome] <no subject> >> >> Hi Tian, >> >> GSM361998 is actually mapped to the mm8 mouse assembly. Perhaps you were >> trying to upload the custom track on mm9/10? The would definitely explain >> the error. Select mm8 from the Gateway page >> (http://genome.ucsc.edu/cgi-bin/hgGateway) >> <http://genome.ucsc.edu/cgi-bin/hgGateway%29> and see if that works. >> >> Please let us know if you have any additional questions: >> [email protected] >> >> - >> Greg Roe >> UCSC Genome Bioinformatics Group >> >> >> >> >> >> On 7/23/12 5:05 PM, tian chi wrote: >> >> >> >>> Re: [Genome] <no subject> Hi Greg, >>> Just found I could not upload a BED file either. The file name is >>> GSM361998, from the following site: >>> >>> http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM361998 >>> >>> I tried to upload, and got the following error message: >>> >>> Error File 'GSM361998.bed' - Error line 662 of custom track: chromEnd >>> larger than chrom chr2 size (181847110 > 181748087) >>> >>> I also got such a message when loading with another file. So it seems your >>> program is acting up. >>> >>> Thanks >>> Tian >>> >>> >>> >>> >>> >>> From: Greg Roe <[email protected]> <mailto:[email protected]> >>> <mailto:[email protected]> >>> Date: Mon, 23 Jul 2012 16:51:48 -0700 >>> To: tian chi <[email protected]> <mailto:[email protected]> >>> <mailto:[email protected]> >>> Cc: <[email protected]> <mailto:[email protected]> >>> <mailto:[email protected]> >>> Subject: Re: [Genome] <no subject> >>> >>> Hi Tian, >>> >>> >>> >>> That is a bigBed file. We tested from here using NCBI link (via >>> bigDataUrl), but got a byte-range request error, so NCBI apparently don't >>> support doing that. >>> >>> >>> You will have to download the file and figure out where to host it >>> yourself to create the custom track. >>> >>> >>> Please let us know if you have any additional questions: >>> [email protected] >>> >>> - >>> Greg Roe >>> UCSC Genome Bioinformatics Group >>> >>> >>> >>> >>> On 7/23/12 12:47 PM, tian chi wrote: >>> >>> >>> >>> >>>> >>>> Hi, >>>> I have a problem adding a custom track. The data (in bb format) are >>>> located >>>> below: >>>> >>>> http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM774289 >>>> >>>> I downloaded the data into my computer. When I tried to upload it to the >>>> Add >>>> Custom Tracks page, I got an error message saying " can not read the bb >>>> file". >>>> >>>> Pls help out! >>>> >>>> Thanks a lot >>>> Tian >>>> >>>> >>>> _______________________________________________ >>>> Genome maillist - [email protected] >>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>>> >>>> >>>> >>> >>> >>> >>> >>> >> >> >> >> > > >
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