Hello, Sven. Despite the ucsc.edu in the URL, we do not actually support the Archaea Browser. I would recommend contacting the Lowe Lab and I see you copied them on your original email. I am copying them here as well. One thing worth noting is that our Browser is currently on v270 while the Archaea Browser is currently on v256 which offers one possible explanation as to why your hg19 images are viewing properly and your H. pylori images are not.
Please contact us again at <mailto:[email protected]> [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: Sven Findeiss <[email protected]> To: [email protected] Cc: [email protected] Date: Tue, 24 Jul 2012 14:56:22 +0200 Subject: UCSC Track Hubs Hello, My name is Sven Findeiss and I'm currently working on UCSC data integration of our recent proteome study. I found the very appealing opportunity to use Track Hubs for large data sets (http://archaea.ucsc.edu/goldenPath/help/hgTrackHubHelp.html). I got everything working including a detailed description page for each track. When I started to integrate the itemImagePath variable into my trackDb.txt file nothing is displayed on the details page anymore. In order to figure out if this is a configuration problem on my side or maybe on the archaea ucsc I set up the same (only changed paths and chromosome identifier) Track Hub for the human hg19 chromosome 1 and it works. Here are the links to my hub-files: human hg19: http://www.tbi.univie.ac.at/~sven/DATA/trackhubs/Test/test1.txt <http://www.tbi.univie.ac.at/%7Esven/DATA/trackhubs/Test/test1.txt> helicobacter pylori 26695: http://www.tbi.univie.ac.at/~sven/DATA/trackhubs/Test_Sven_pylori/test1.txt <http://www.tbi.univie.ac.at/%7Esven/DATA/trackhubs/Test_Sven_pylori/test1.t xt> I loaded both on the corresponding UCSC and an item should be displayed in the region 1000 - 15000 (chr for hpylori and chr1 for human). To show you the difference of the details page I attached two screenshots. Both directories are readable from the outside and by that you could also check my config files etc. of the hubs It would be really nice to get the itemImagePath variable working on the archaea UCSC as well. Many thanks in advance! With kind regards, Sven -- --------------------------------------------- Sven Findeiss University of Vienna Research Group Bioinformatics and Computational Biology (Institute for Theoretical Chemistry) Waehringer Strasse 17 room 307 A-1090 Vienna Austria Phone: +43 1 4277 52743 <tel:%2B43%201%204277%2052743> Fax: +43 1 4277 52793 <tel:%2B43%201%204277%2052793> email: [email protected] web: http://tbi.univie.ac.at/~sven/ <http://tbi.univie.ac.at/%7Esven/> _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
