Hi Shawn, Unfortunately, the Chimp Quality Scores that this track (simpleChimpDiff on hg16) was built with are no longer available and there isn't a good way to build that data set without them.
If you're interested, you can see how the data set/track was created in our make docs: http://genome-source.cse.ucsc.edu/gitweb/?p=kent.git;a=blob;f=src/hg/makeDb/doc/hg16.txt;h=45c709694aca3fa4455766d3e20c5ac661031dc2;hb=HEAD (see line 6207) Please let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 7/13/12 7:46 PM, Shawn Cho wrote: > Hello, > > > > I am looking for a list of the divergent base pairs between the human/chimp > genome when aligned. It would also be good to mask all human SNPs and > repeats. Something like chimpSimpleDiff.txt would be great, but I only found > that for the hg16 assembly. > > > > Would you please guide me on how to do this? > > > > Thanks in advance, > > Shawn C. > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
