Hi, Varun. You want to use the mmBlastTab ( mouse Tab-delimited blast output file) table together with UCSC genes. Go to the table browser (http://genome.ucsc.edu/cgi-bin/hgTables) and:
- Select human/hg19 as the assembly - group/track/table: Genes and Gene Pred/UCSC Genes/knownGene - region: genome (or if your list is a list of positions, click define regions and paste there) - identifiers: (paste list, if you have gene names) output format: selected fields from primary and related tables Get Output - scroll down, and under "Linked Tables" check " mmBlastTab" and click "allow selection from checked tables" Now you can select the fields you need. Maybe including: hg19.knownGene.name, chrom, txStart and txEnd hg19.kgXref. geneSymbol hg19.mmBlastTab.query, target, tStart, tEnd If you go to the genome browser and click on any gene in the UCSC Genes track you'll see a section called "Orthologous Genes in Other Species", which has some information about blast. Please let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 7/30/12 7:46 AM, varun gupta wrote: > Hi Everyone > Hope you are doing good > I have a question. > I have list of some of the human genes. They are ribosomal assembly genes. > What i am interested is to find the homologous gene's in mouse. > > Is there a way i can do that. > > Hope to hear from you soon > > > Regards > Varun > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
