commit: 3a51163e4ade6bf734ef975ab35fd0b1ac4e808a Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de> AuthorDate: Mon Mar 17 06:57:53 2014 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Mon Mar 17 06:57:53 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3a51163e
Merge https://github.com/gentoo-science/sci app-editors/neovim/ChangeLog | 9 + .../omniorbpy => app-editors/neovim}/metadata.xml | 0 app-editors/neovim/neovim-9999.ebuild | 29 + app-text/jabref/ChangeLog | 5 + app-text/jabref/Manifest | 1 + ...ref-2.10_beta2-r1.ebuild => jabref-2.10.ebuild} | 2 +- dev-java/glazedlists/ChangeLog | 12 + dev-java/glazedlists/Manifest | 1 + .../files/glazedlists-1.8.0-build.xml.patch | 57 + dev-java/glazedlists/glazedlists-1.8.0.ebuild | 50 + .../utf8proc => dev-java/glazedlists}/metadata.xml | 2 +- dev-lang/vtune/ChangeLog | 7 +- dev-lang/vtune/Manifest | 1 + ...2.305106.ebuild => vtune-13.1.13.313935.ebuild} | 4 +- dev-python/healpy/ChangeLog | 6 + dev-python/healpy/Manifest | 2 +- .../{healpy-1.7.3.ebuild => healpy-1.7.4.ebuild} | 0 dev-python/theano/ChangeLog | 12 - dev-python/theano/Manifest | 1 - dev-python/theano/metadata.xml | 13 - dev-python/theano/theano-0.6.0_rc3.ebuild | 33 - dev-util/intel-ocl-sdk/ChangeLog | 7 +- dev-util/intel-ocl-sdk/Manifest | 1 + ...385.ebuild => intel-ocl-sdk-3.2.1.16712.ebuild} | 6 +- profiles/package.mask | 43 - profiles/updates/1Q-2014 | 1 + sci-astronomy/astrometry/ChangeLog | 5 +- sci-astronomy/astrometry/astrometry-0.43.ebuild | 18 +- sci-astronomy/eye/ChangeLog | 8 +- sci-astronomy/eye/Manifest | 1 - sci-astronomy/eye/eye-1.4.1.ebuild | 32 - sci-astronomy/eye/eye-9999.ebuild | 16 +- sci-astronomy/eye/files/eye-1.4.1-configure.patch | 58 - sci-astronomy/eye/metadata.xml | 4 +- sci-astronomy/missfits/ChangeLog | 8 +- sci-astronomy/missfits/Manifest | 1 - .../missfits/files/missfits-2.4.0-configure.patch | 108 - sci-astronomy/missfits/missfits-2.4.0.ebuild | 29 - sci-astronomy/missfits/missfits-9999.ebuild | 11 +- sci-astronomy/psfex/ChangeLog | 8 +- sci-astronomy/psfex/metadata.xml | 10 +- sci-astronomy/psfex/psfex-3.9.1-r1.ebuild | 54 - sci-astronomy/psfex/psfex-3.9.1.ebuild | 1 + sci-astronomy/psfex/psfex-9999.ebuild | 28 +- sci-astronomy/scamp/ChangeLog | 7 +- sci-astronomy/scamp/metadata.xml | 10 +- sci-astronomy/scamp/scamp-1.7.0-r2.ebuild | 24 +- sci-astronomy/scamp/scamp-9999.ebuild | 26 +- sci-astronomy/sextractor/ChangeLog | 7 +- .../sextractor/sextractor-2.8.6-r1.ebuild | 5 +- sci-astronomy/sextractor/sextractor-9999.ebuild | 24 +- sci-astronomy/skymaker/ChangeLog | 7 +- sci-astronomy/skymaker/Manifest | 1 - .../skymaker/files/skymaker-configure.patch | 40 - sci-astronomy/skymaker/skymaker-3.3.3.ebuild | 27 - sci-astronomy/skymaker/skymaker-9999.ebuild | 15 +- sci-astronomy/stiff/ChangeLog | 7 +- sci-astronomy/stiff/metadata.xml | 4 +- sci-astronomy/stiff/stiff-9999.ebuild | 3 +- sci-astronomy/stuff/ChangeLog | 7 +- sci-astronomy/stuff/Manifest | 1 - sci-astronomy/stuff/files/stuff-configure.patch | 65 - sci-astronomy/stuff/stuff-1.19.ebuild | 27 - sci-astronomy/stuff/stuff-9999.ebuild | 15 +- sci-astronomy/swarp/ChangeLog | 5 +- sci-astronomy/swarp/swarp-9999.ebuild | 19 +- sci-astronomy/weightwatcher/ChangeLog | 7 +- sci-astronomy/weightwatcher/Manifest | 1 - .../weightwatcher/weightwatcher-1.8.10.ebuild | 29 - .../weightwatcher/weightwatcher-9999.ebuild | 13 +- sci-chemistry/coot/coot-9999.ebuild | 2 +- sci-chemistry/freeon/ChangeLog | 7 + sci-chemistry/freeon/Manifest | 4 - sci-chemistry/freeon/freeon-1.0.4.ebuild | 33 - sci-chemistry/freeon/freeon-1.0.5.ebuild | 33 - sci-chemistry/freeon/freeon-1.0.6.ebuild | 33 - sci-chemistry/freeon/freeon-1.0.7.ebuild | 25 - sci-chemistry/freeon/freeon-9999.ebuild | 4 +- sci-chemistry/gromacs/ChangeLog | 6 + sci-chemistry/gromacs/gromacs-4.6.9999.ebuild | 2 +- sci-chemistry/gromacs/gromacs-9999.ebuild | 6 +- sci-chemistry/phenix-bin/ChangeLog | 5 +- .../phenix-bin/phenix-bin-1.8.4.1496.ebuild | 7 +- sci-chemistry/pymol/pymol-9999.ebuild | 2 +- sci-chemistry/ucsf-tools/ChangeLog | 11 - sci-chemistry/ucsf-tools/Manifest | 2 - sci-chemistry/ucsf-tools/metadata.xml | 5 - sci-chemistry/ucsf-tools/ucsf-tools-9999.ebuild | 43 - sci-chemistry/usf-tools/usf-tools-9999.ebuild | 2 +- sci-chemistry/votca-csg/votca-csg-9999.ebuild | 2 +- .../votca-csgapps/votca-csgapps-9999.ebuild | 2 +- sci-libs/blastdb/blastdb-9999.ebuild | 2 +- sci-libs/dealii/ChangeLog | 9 + sci-libs/dealii/dealii-8.0.0.ebuild | 2 +- sci-libs/dealii/dealii-8.1.0.ebuild | 118 +- sci-libs/dealii/dealii-9999.ebuild | 46 +- sci-libs/dealii/metadata.xml | 2 +- sci-libs/libsc/ChangeLog | 9 + sci-libs/libsc/Manifest | 1 + .../libsc-0.7.3.ebuild} | 38 +- sci-libs/{factory => libsc}/metadata.xml | 8 +- sci-libs/mkl/ChangeLog | 7 +- sci-libs/mkl/Manifest | 1 + ...-11.1.0.080-r1.ebuild => mkl-11.1.1.106.ebuild} | 4 +- sci-libs/o2scl/ChangeLog | 8 +- sci-libs/o2scl/Manifest | 2 +- .../{o2scl-0.913.ebuild => o2scl-0.914.ebuild} | 0 sci-libs/openlibm/openlibm-9999.ebuild | 3 +- sci-libs/p4est/ChangeLog | 11 + sci-libs/p4est/Manifest | 1 + ...l-fix.patch => p4est-0.3.4.2-libtool-fix.patch} | 0 .../p4est-0.3.5-add_missing_autotools_files.patch | 2535 ++++++++++++++++++++ sci-libs/p4est/p4est-0.3.4.2.ebuild | 4 +- .../{p4est-0.3.4.2.ebuild => p4est-0.3.5.ebuild} | 29 +- sci-libs/pagmo/pagmo-9999.ebuild | 2 +- sci-libs/pmx/ChangeLog | 3 + sci-libs/pmx/pmx-9999.ebuild | 12 +- sci-libs/spglib/ChangeLog | 14 + sci-libs/spglib/Manifest | 1 + sci-libs/spglib/files/spglib-openmp.patch | 22 + .../scirenderer => sci-libs/spglib}/metadata.xml | 6 +- sci-libs/spglib/spglib-1.6.0.ebuild | 34 + sci-libs/votca-tools/votca-tools-9999.ebuild | 2 +- sci-mathematics/frama-c/ChangeLog | 8 +- sci-mathematics/frama-c/Manifest | 1 + sci-mathematics/frama-c/files/frama-c-make.patch | 12 + .../frama-c/files/frama-c-ocaml-4.01.patch | 145 ++ ...a-c-20120901.ebuild => frama-c-20130601.ebuild} | 14 +- sci-mathematics/mdp/mdp-9999.ebuild | 2 +- sci-mathematics/z3/ChangeLog | 8 +- sci-mathematics/z3/z3-9999.ebuild | 3 +- .../elmer-meshgen2d/elmer-meshgen2d-9999.ebuild | 2 +- sci-visualization/visit/visit-2.7.1.ebuild | 1 - sys-cluster/charm/ChangeLog | 8 + sys-cluster/charm/Manifest | 1 + ...-6.6.0_rc1-r1.ebuild => charm-6.6.0_rc2.ebuild} | 4 +- sys-cluster/lustre/ChangeLog | 15 + ...ld-make-AC-check-for-linux-arch-sandbox-f.patch | 2 +- ...cfs-update-zfs-proc-handling-to-seq_files.patch | 10 +- ...rocfs-move-mgs-proc-handling-to-seq_files.patch | 2 +- .../0004-LU-3319-procfs-fix-symlink-handling.patch | 26 +- ...rocfs-move-osp-proc-handling-to-seq_files.patch | 26 +- ...rocfs-move-lod-proc-handling-to-seq_files.patch | 14 +- ...cfs-move-mdd-ofd-proc-handling-to-seq_fil.patch | 133 +- ...cfs-move-mdt-mds-proc-handling-to-seq_fil.patch | 20 +- ...cfs-update-ldiskfs-proc-handling-to-seq_f.patch | 38 +- ...0010-LU-3319-lprocfs-client-side-cleanups.patch | 8 +- ...-LU-3974-llite-use-new-struct-dir_context.patch | 20 +- ...-LU-3974-llite-invalidatepage-api-changed.patch | 2 +- 149 files changed, 3657 insertions(+), 1141 deletions(-)
