commit: 8fdfde872ca6dc317739c26a7a195b11a86283af Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun Mar 23 17:57:26 2014 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Mar 23 17:57:26 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=8fdfde87
sci-biology/Ray: a new package, maybe needs decent inspection from cluster herd and also java Package-Manager: portage-2.2.7 --- sci-biology/Ray/ChangeLog | 10 ++++++++++ sci-biology/Ray/Ray-2.3.0.ebuild | 28 ++++++++++++++++++++++++++++ sci-biology/Ray/metadata.xml | 9 +++++++++ 3 files changed, 47 insertions(+) diff --git a/sci-biology/Ray/ChangeLog b/sci-biology/Ray/ChangeLog new file mode 100644 index 0000000..5341c31 --- /dev/null +++ b/sci-biology/Ray/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/Ray +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*Ray-2.3.0 (23 Mar 2014) + + 23 Mar 2014; Martin Mokrejs <[email protected]> +Ray-2.3.0.ebuild, + +metadata.xml: + sci-biology/Ray: a new package, maybe needs decent inspection from cluster + herd and also java diff --git a/sci-biology/Ray/Ray-2.3.0.ebuild b/sci-biology/Ray/Ray-2.3.0.ebuild new file mode 100644 index 0000000..2a904be --- /dev/null +++ b/sci-biology/Ray/Ray-2.3.0.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Assembler for metagenomes, genomes and transcriptomes (untested) using parallel MPI" +HOMEPAGE="http://denovoassembler.sourceforge.net/"; +SRC_URI="http://sourceforge.net/projects/denovoassembler/files/Ray-"${PV}".tar.bz2"; + +LICENSE="LGPL-3 GPL-3" # both must be agreed +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="virtual/mpi" +RDEPEND="${DEPEND} + sys-cluster/osc-mpiexec" + +src_prepare(){ + cp -p README.md README + cp -p README.md RayPlatform/README +} + +src_install(){ + dobin Ray + dolib libRayPlatform.a libRay.a +} diff --git a/sci-biology/Ray/metadata.xml b/sci-biology/Ray/metadata.xml new file mode 100644 index 0000000..07b5255 --- /dev/null +++ b/sci-biology/Ray/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
