commit: 116a34b4a030050965fddb6fda334062ef424105 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun Mar 23 19:09:18 2014 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Mar 23 19:09:18 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=116a34b4
sci-biology/artemis-bin: version bump, added a link to INSTALL docs Package-Manager: portage-2.2.7 --- sci-biology/artemis-bin/ChangeLog | 9 +++++++-- ...emis-bin-13.2.12.ebuild => artemis-bin-16.0.6.ebuild} | 16 +++++++++++++--- 2 files changed, 20 insertions(+), 5 deletions(-) diff --git a/sci-biology/artemis-bin/ChangeLog b/sci-biology/artemis-bin/ChangeLog index 9885717..6cd5bd4 100644 --- a/sci-biology/artemis-bin/ChangeLog +++ b/sci-biology/artemis-bin/ChangeLog @@ -1,7 +1,13 @@ # ChangeLog for sci-biology/artemis-bin -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*artemis-bin-16.0.6 (23 Mar 2014) + + 23 Mar 2014; Martin Mokrejs <[email protected]> + +artemis-bin-16.0.6.ebuild, -artemis-bin-13.2.12.ebuild: + sci-biology/artemis-bin: version bump, added a link to INSTALL docs + 03 Mar 2013; Justin Lecher <[email protected]> artemis-bin-13.2.12.ebuild, metadata.xml: Clean whitespace errors @@ -11,4 +17,3 @@ 08 Jan 2012; Martin Mokrejs <[email protected]> +artemis-bin-13.2.12.ebuild, +metadata.xml: initial, not yet working ebuild - diff --git a/sci-biology/artemis-bin/artemis-bin-13.2.12.ebuild b/sci-biology/artemis-bin/artemis-bin-16.0.6.ebuild similarity index 51% rename from sci-biology/artemis-bin/artemis-bin-13.2.12.ebuild rename to sci-biology/artemis-bin/artemis-bin-16.0.6.ebuild index fa1edc3..528d3e8 100644 --- a/sci-biology/artemis-bin/artemis-bin-13.2.12.ebuild +++ b/sci-biology/artemis-bin/artemis-bin-16.0.6.ebuild @@ -6,9 +6,12 @@ EAPI=3 inherit java-pkg-2 +MY_V="16" + DESCRIPTION="DNA sequence viewer, annotation (Artemis) and comparison (ACT) tool" HOMEPAGE="http://www.sanger.ac.uk/resources/software/artemis"; -SRC_URI="ftp://ftp.sanger.ac.uk/pub4/resources/software/artemis/v13/v"${PV}"/artemis_compiled_v"${PV}".tar.gz"; +SRC_URI="ftp://ftp.sanger.ac.uk/pub4/resources/software/artemis/v"${MY_V}"/v"${PV}"/artemis_compiled_v"${PV}".tar.gz + ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/artemis.pdf"; LICENSE="GPL-2" SLOT="0" @@ -16,6 +19,13 @@ KEYWORDS="" IUSE="" DEPEND="sci-biology/samtools - sci-biology/bamview" + sci-biology/bambino" # aka BamView RDEPEND="${DEPEND} - >=virtual/jre-1.5" + >=virtual/jre-1.6" + +src_install(){ + dodoc artemis.pdf +} + +# do not know what is the diffeerence between artemis_compiled_v16.0.6.tar.gz, artemis_v16.0.6.jar and sartemis_v16.0.6.jar +# ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v16/v16.0.6/
