commit: e5dded97493ddde7b18b92023fc77bb7822f64ad Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun Mar 23 20:31:23 2014 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Mar 23 20:31:23 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e5dded97
sci-biology/scaffold_builder: new package but with a missing LICENSE --- sci-biology/scaffold_builder/ChangeLog | 10 +++++++ sci-biology/scaffold_builder/metadata.xml | 9 +++++++ .../scaffold_builder-20130403.ebuild | 31 ++++++++++++++++++++++ 3 files changed, 50 insertions(+) diff --git a/sci-biology/scaffold_builder/ChangeLog b/sci-biology/scaffold_builder/ChangeLog new file mode 100644 index 0000000..72c9e84 --- /dev/null +++ b/sci-biology/scaffold_builder/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/scaffold_builder +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*scaffold_builder-20130403 (23 Mar 2014) + + 23 Mar 2014; Martin Mokrejs <[email protected]> + +scaffold_builder-20130403.ebuild, +metadata.xml: + new package but with a missing LICENSE + diff --git a/sci-biology/scaffold_builder/metadata.xml b/sci-biology/scaffold_builder/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/scaffold_builder/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild b/sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild new file mode 100644 index 0000000..f32c0cbf --- /dev/null +++ b/sci-biology/scaffold_builder/scaffold_builder-20130403.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=4 + +S="${WORKDIR}" + +DESCRIPTION="Combine FASTA contigs from a de novo assembly into scaffolds using a reference assembly" +HOMEPAGE="http://sourceforge.net/projects/scaffold-b/"; +SRC_URI="http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2.py + http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2_help.doc + http://downloads.sourceforge.net/project/scaffold-b/Manual_v2.1.pdf"; + +LICENSE="" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + dev-lang/python" + +src_install(){ + echo "#! /usr/bin/env python" > scaffold_builder_v2.py || die + cat "${DISTDIR}"/scaffold_builder_v2.py >> scaffold_builder_v2.py || die + dobin scaffold_builder_v2.py + dodoc "${DISTDIR}"/scaffold_builder_v2_help.doc + cp "${DISTDIR}"/Manual_v2.1.pdf scaffold_builder_v2_Manual.pdf || die + dodoc scaffold_builder_v2_Manual.pdf +}
