commit: 5c73aaa78d02e3b384be3b52120625ed8b507e19 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Mon Mar 24 01:41:35 2014 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon Mar 24 01:41:35 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5c73aaa7
sci-biology/freebayes: a new package skeleton; need to retrive from git in a recursive way --- sci-biology/freebayes/ChangeLog | 10 ++++++++++ sci-biology/freebayes/freebayes-9999.ebuild | 30 +++++++++++++++++++++++++++++ sci-biology/freebayes/metadata.xml | 9 +++++++++ 3 files changed, 49 insertions(+) diff --git a/sci-biology/freebayes/ChangeLog b/sci-biology/freebayes/ChangeLog new file mode 100644 index 0000000..17424da --- /dev/null +++ b/sci-biology/freebayes/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/freebayes +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*freebayes-9999 (24 Mar 2014) + + 24 Mar 2014; Martin Mokrejs <[email protected]> + +freebayes-9999.ebuild, +metadata.xml: + a new package skeleton; need to retrive from git in a recursive way + diff --git a/sci-biology/freebayes/freebayes-9999.ebuild b/sci-biology/freebayes/freebayes-9999.ebuild new file mode 100644 index 0000000..0876efb --- /dev/null +++ b/sci-biology/freebayes/freebayes-9999.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit eutils + +[ "$PV" == "9999" ] && inherit git-2 + +DESCRIPTION="Bayesian genetic variant detector designed to find small polymorphisms: SNPs, indels, MNPs and complex events" +HOMEPAGE="https://github.com/ekg/freebayes"; +EGIT_REPO_URI="git://github.com/ekg/freebayes.git" + +# need top checkout vcflib/ as well +# +# To build freebayes you must use git to also download its submodules. +# Do so by downloading freebayes again using this command (note --recursive flag): +# git clone --recursive git://github.com/ekg/freebayes.git +# + +LICENSE="MIT" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + sci-biology/bamtools + sci-biology/samtools" diff --git a/sci-biology/freebayes/metadata.xml b/sci-biology/freebayes/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/freebayes/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
