commit: 4209a296d2ae3587c269da77976813d6f80d2b0b Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Wed Apr 2 09:30:37 2014 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Wed Apr 2 09:30:37 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4209a296
sci-biology/consed: replace hardcoded CONSED_HOME path in installed perl scripts to fix situations when user has for some reason an empty CONSED_HOME Package-Manager: portage-2.2.7 --- sci-biology/consed/ChangeLog | 7 ++++++- sci-biology/consed/consed-20-r1.ebuild | 1 + sci-biology/consed/consed-21.ebuild | 1 + sci-biology/consed/consed-22.ebuild | 1 + sci-biology/consed/consed-23.ebuild | 1 + sci-biology/consed/consed-24.ebuild | 1 + sci-biology/consed/consed-25.ebuild | 1 + sci-biology/consed/consed-26.ebuild | 1 + sci-biology/consed/consed-27.ebuild | 1 + 9 files changed, 14 insertions(+), 1 deletion(-) diff --git a/sci-biology/consed/ChangeLog b/sci-biology/consed/ChangeLog index 3ce8ee3..0fe8c19 100644 --- a/sci-biology/consed/ChangeLog +++ b/sci-biology/consed/ChangeLog @@ -2,6 +2,12 @@ # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 02 Apr 2014; Martin Mokrejs <[email protected]> consed-20-r1.ebuild, + consed-21.ebuild, consed-22.ebuild, consed-23.ebuild, consed-24.ebuild, + consed-25.ebuild, consed-26.ebuild, consed-27.ebuild: + sci-biology/consed: replace hardcoded CONSED_HOME path in installed perl + scripts to fix situations when user has for some reason an empty CONSED_HOME + *consed-27 (23 Mar 2014) *consed-26 (23 Mar 2014) *consed-25 (23 Mar 2014) @@ -22,4 +28,3 @@ renamed dependency from openmotif to motif consed-20-r1.ebuild, added some extra patches files/nLine.h.patch, files/nextPhredPipeline.cpp.patch - diff --git a/sci-biology/consed/consed-20-r1.ebuild b/sci-biology/consed/consed-20-r1.ebuild index 2eb8df3..cfcb66e 100644 --- a/sci-biology/consed/consed-20-r1.ebuild +++ b/sci-biology/consed/consed-20-r1.ebuild @@ -65,6 +65,7 @@ src_install() { solexa_example_answer selectRegions selectRegionsAnswer || die echo 'CONSED_HOME='${EPREFIX}'/usr' > "${S}/99consed" doenvd "${S}/99consed" || die + sed -e "s#/usr/local/genome#${EPREFIX}/usr#" -i "${D}"/usr/bin/*.perl || die dodoc README.txt *_announcement.txt || die } diff --git a/sci-biology/consed/consed-21.ebuild b/sci-biology/consed/consed-21.ebuild index 7163d60..55ba90a 100644 --- a/sci-biology/consed/consed-21.ebuild +++ b/sci-biology/consed/consed-21.ebuild @@ -64,6 +64,7 @@ src_install() { align454reads align454reads_answer solexa_example \ solexa_example_answer selectRegions selectRegionsAnswer || die echo 'CONSED_HOME='${EPREFIX}'/usr' > "${S}/99consed" + sed -e "s#/usr/local/genome#${EPREFIX}/usr#" -i "${D}"/usr/bin/*.perl || die doenvd "${S}/99consed" || die dodoc README.txt *_announcement.txt || die } diff --git a/sci-biology/consed/consed-22.ebuild b/sci-biology/consed/consed-22.ebuild index 7163d60..d0a26e8 100644 --- a/sci-biology/consed/consed-22.ebuild +++ b/sci-biology/consed/consed-22.ebuild @@ -65,6 +65,7 @@ src_install() { solexa_example_answer selectRegions selectRegionsAnswer || die echo 'CONSED_HOME='${EPREFIX}'/usr' > "${S}/99consed" doenvd "${S}/99consed" || die + sed -e "s#/usr/local/genome#${EPREFIX}/usr#" -i "${D}"/usr/bin/*.perl || die dodoc README.txt *_announcement.txt || die } diff --git a/sci-biology/consed/consed-23.ebuild b/sci-biology/consed/consed-23.ebuild index 7163d60..d0a26e8 100644 --- a/sci-biology/consed/consed-23.ebuild +++ b/sci-biology/consed/consed-23.ebuild @@ -65,6 +65,7 @@ src_install() { solexa_example_answer selectRegions selectRegionsAnswer || die echo 'CONSED_HOME='${EPREFIX}'/usr' > "${S}/99consed" doenvd "${S}/99consed" || die + sed -e "s#/usr/local/genome#${EPREFIX}/usr#" -i "${D}"/usr/bin/*.perl || die dodoc README.txt *_announcement.txt || die } diff --git a/sci-biology/consed/consed-24.ebuild b/sci-biology/consed/consed-24.ebuild index 7163d60..d0a26e8 100644 --- a/sci-biology/consed/consed-24.ebuild +++ b/sci-biology/consed/consed-24.ebuild @@ -65,6 +65,7 @@ src_install() { solexa_example_answer selectRegions selectRegionsAnswer || die echo 'CONSED_HOME='${EPREFIX}'/usr' > "${S}/99consed" doenvd "${S}/99consed" || die + sed -e "s#/usr/local/genome#${EPREFIX}/usr#" -i "${D}"/usr/bin/*.perl || die dodoc README.txt *_announcement.txt || die } diff --git a/sci-biology/consed/consed-25.ebuild b/sci-biology/consed/consed-25.ebuild index 7163d60..d0a26e8 100644 --- a/sci-biology/consed/consed-25.ebuild +++ b/sci-biology/consed/consed-25.ebuild @@ -65,6 +65,7 @@ src_install() { solexa_example_answer selectRegions selectRegionsAnswer || die echo 'CONSED_HOME='${EPREFIX}'/usr' > "${S}/99consed" doenvd "${S}/99consed" || die + sed -e "s#/usr/local/genome#${EPREFIX}/usr#" -i "${D}"/usr/bin/*.perl || die dodoc README.txt *_announcement.txt || die } diff --git a/sci-biology/consed/consed-26.ebuild b/sci-biology/consed/consed-26.ebuild index 7163d60..d0a26e8 100644 --- a/sci-biology/consed/consed-26.ebuild +++ b/sci-biology/consed/consed-26.ebuild @@ -65,6 +65,7 @@ src_install() { solexa_example_answer selectRegions selectRegionsAnswer || die echo 'CONSED_HOME='${EPREFIX}'/usr' > "${S}/99consed" doenvd "${S}/99consed" || die + sed -e "s#/usr/local/genome#${EPREFIX}/usr#" -i "${D}"/usr/bin/*.perl || die dodoc README.txt *_announcement.txt || die } diff --git a/sci-biology/consed/consed-27.ebuild b/sci-biology/consed/consed-27.ebuild index 7163d60..d0a26e8 100644 --- a/sci-biology/consed/consed-27.ebuild +++ b/sci-biology/consed/consed-27.ebuild @@ -65,6 +65,7 @@ src_install() { solexa_example_answer selectRegions selectRegionsAnswer || die echo 'CONSED_HOME='${EPREFIX}'/usr' > "${S}/99consed" doenvd "${S}/99consed" || die + sed -e "s#/usr/local/genome#${EPREFIX}/usr#" -i "${D}"/usr/bin/*.perl || die dodoc README.txt *_announcement.txt || die }
