jlec 15/02/28 10:51:24 Modified: samtools-1.2.ebuild ChangeLog Log: Fix depend rules in make which break due to unbundling of htslib, #541134; use LD_LIBRARY_PATH druing tests (Portage version: 2.2.17/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.2 sci-biology/samtools/samtools-1.2.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/samtools-1.2.ebuild?rev=1.2&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/samtools-1.2.ebuild?rev=1.2&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/samtools-1.2.ebuild?r1=1.1&r2=1.2 Index: samtools-1.2.ebuild =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-1.2.ebuild,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- samtools-1.2.ebuild 18 Feb 2015 10:21:10 -0000 1.1 +++ samtools-1.2.ebuild 28 Feb 2015 10:51:24 -0000 1.2 @@ -1,6 +1,6 @@ # Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-1.2.ebuild,v 1.1 2015/02/18 10:21:10 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-1.2.ebuild,v 1.2 2015/02/28 10:51:24 jlec Exp $ EAPI=5 @@ -61,7 +61,7 @@ HTSLIB=$($(tc-getPKG_CONFIG) --libs htslib) BAMLIB="libbam.so" ) - emake "${mymakeargs[@]}" test + LD_LIBRARY_PATH="${S}" emake "${mymakeargs[@]}" test } src_install() { 1.23 sci-biology/samtools/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/ChangeLog?rev=1.23&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/ChangeLog?rev=1.23&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/samtools/ChangeLog?r1=1.22&r2=1.23 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v retrieving revision 1.22 retrieving revision 1.23 diff -u -r1.22 -r1.23 --- ChangeLog 18 Feb 2015 10:21:10 -0000 1.22 +++ ChangeLog 28 Feb 2015 10:51:24 -0000 1.23 @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/samtools # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.22 2015/02/18 10:21:10 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.23 2015/02/28 10:51:24 jlec Exp $ + + 28 Feb 2015; Justin Lecher <[email protected]> + files/samtools-1.2-buildsystem.patch, samtools-1.2.ebuild: + Fix depend rules in make which break due to unbundling of htslib, #541134; use + LD_LIBRARY_PATH druing tests *samtools-1.2 (18 Feb 2015)
