jlec 15/03/03 15:26:16 Modified: metadata.xml ChangeLog Added: paml-4.4c-r1.ebuild Log: Bump EAPI (Portage version: 2.2.17/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.2 sci-biology/paml/metadata.xml file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/paml/metadata.xml?rev=1.2&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/paml/metadata.xml?rev=1.2&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/paml/metadata.xml?r1=1.1&r2=1.2 Index: metadata.xml =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/paml/metadata.xml,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- metadata.xml 21 Oct 2006 05:57:50 -0000 1.1 +++ metadata.xml 3 Mar 2015 15:26:16 -0000 1.2 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> <pkgmetadata> -<herd>sci-biology</herd> + <herd>sci-biology</herd> </pkgmetadata> 1.16 sci-biology/paml/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/paml/ChangeLog?rev=1.16&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/paml/ChangeLog?rev=1.16&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/paml/ChangeLog?r1=1.15&r2=1.16 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v retrieving revision 1.15 retrieving revision 1.16 diff -u -r1.15 -r1.16 --- ChangeLog 12 Sep 2010 17:19:45 -0000 1.15 +++ ChangeLog 3 Mar 2015 15:26:16 -0000 1.16 @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/paml -# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.15 2010/09/12 17:19:45 xarthisius Exp $ +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.16 2015/03/03 15:26:16 jlec Exp $ + +*paml-4.4c-r1 (03 Mar 2015) + + 03 Mar 2015; Justin Lecher <[email protected]> +paml-4.4c-r1.ebuild, + metadata.xml: + Bump EAPI 12 Sep 2010; Kacper Kowalik <[email protected]> -paml-4.3a.ebuild, -paml-4.3b.ebuild: @@ -69,4 +75,3 @@ 21 Oct 2006; Donnie Berkholz <[email protected]>; +metadata.xml, +paml-3.15.ebuild: New package: Phylogenetic Analysis by Maximum Likelihood. - 1.1 sci-biology/paml/paml-4.4c-r1.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/paml/paml-4.4c-r1.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/paml/paml-4.4c-r1.ebuild?rev=1.1&content-type=text/plain Index: paml-4.4c-r1.ebuild =================================================================== # Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4.4c-r1.ebuild,v 1.1 2015/03/03 15:26:16 jlec Exp $ EAPI=5 inherit toolchain-funcs versionator MY_P=$(version_format_string '${PN}$1$2') DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"; SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz"; LICENSE="free-noncomm" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="" S=${WORKDIR}/${MY_P} src_prepare() { # Notice send by mail to prof. Ziheng Yang sed -i "s/\$(CC)/& \$(LDFLAGS)/" src/Makefile || die #335608 } src_compile() { emake -C src CC="$(tc-getCC)" \ CFLAGS="${CFLAGS}" LDFLAGS="${LDFLAGS}" } src_install() { pushd "${S}"/src dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 popd dodoc README.txt doc/* insinto /usr/share/${PN}/control doins *.ctl insinto /usr/share/${PN}/dat doins stewart* *.dat dat/* insinto /usr/share/${PN} doins -r examples/ }
