jlec 15/03/05 11:07:15 Modified: metadata.xml ChangeLog Added: mammoth-1.0-r1.ebuild Removed: mammoth-1.0.ebuild Log: EAPI Bump (Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.3 sci-biology/mammoth/metadata.xml file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mammoth/metadata.xml?rev=1.3&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mammoth/metadata.xml?rev=1.3&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mammoth/metadata.xml?r1=1.2&r2=1.3 Index: metadata.xml =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/mammoth/metadata.xml,v retrieving revision 1.2 retrieving revision 1.3 diff -u -r1.2 -r1.3 --- metadata.xml 19 Oct 2012 10:46:56 -0000 1.2 +++ metadata.xml 5 Mar 2015 11:07:15 -0000 1.3 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> <pkgmetadata> - <herd>sci-biology</herd> + <herd>sci-biology</herd> </pkgmetadata> 1.7 sci-biology/mammoth/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mammoth/ChangeLog?rev=1.7&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mammoth/ChangeLog?rev=1.7&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mammoth/ChangeLog?r1=1.6&r2=1.7 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/mammoth/ChangeLog,v retrieving revision 1.6 retrieving revision 1.7 diff -u -r1.6 -r1.7 --- ChangeLog 19 Oct 2012 10:46:56 -0000 1.6 +++ ChangeLog 5 Mar 2015 11:07:15 -0000 1.7 @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/mammoth -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mammoth/ChangeLog,v 1.6 2012/10/19 10:46:56 jlec Exp $ +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mammoth/ChangeLog,v 1.7 2015/03/05 11:07:15 jlec Exp $ + +*mammoth-1.0-r1 (05 Mar 2015) + + 05 Mar 2015; Justin Lecher <[email protected]> +mammoth-1.0-r1.ebuild, + -mammoth-1.0.ebuild, metadata.xml: + EAPI Bump 19 Oct 2012; Justin Lecher <[email protected]> mammoth-1.0.ebuild, metadata.xml: @@ -26,4 +32,3 @@ +mammoth-1.0.ebuild: Add mammoth, a nice structural alignment program. It contains the MaxSub algorithm, which is used by lots of people. - 1.1 sci-biology/mammoth/mammoth-1.0-r1.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mammoth/mammoth-1.0-r1.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mammoth/mammoth-1.0-r1.ebuild?rev=1.1&content-type=text/plain Index: mammoth-1.0-r1.ebuild =================================================================== # Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/mammoth/mammoth-1.0-r1.ebuild,v 1.1 2015/03/05 11:07:15 jlec Exp $ EAPI=5 inherit autotools eutils fortran-2 flag-o-matic toolchain-funcs MY_P="${P}-src" DESCRIPTION="MAtching Molecular Models Obtained from THeory" HOMEPAGE="http://ub.cbm.uam.es/software.php"; SRC_URI="${MY_P}.tgz" LICENSE="mammoth" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="" RESTRICT="fetch" S=${WORKDIR}/${MY_P} pkg_nofetch() { einfo "Download the source code for MAMMOTH from" einfo "${HOMEPAGE}" einfo "and place it in ${DISTDIR}" } src_prepare() { # Broken with gfortran without this patch epatch "${FILESDIR}"/${PV}-consistent-system-intrinsic.patch case $(tc-getFC) in g77) append-fflags -ffixed-line-length-none ;; gfortran) append-fflags -ffixed-line-length-none ;; esac # It comes with a custom-modified configure for some reason, # which forces you to pass in the Fortran compiler as a parameter. # Let's do the standard stuff instead. eautoreconf }
