commit: 0b7f4bf5b3512c1ee1107bb8d76b962c69e0a1b9 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sat Mar 21 01:14:26 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sat Mar 21 01:14:26 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0b7f4bf5
sci-biology/KaKs_Calculator: new package but code does not compile; awaiting some answer from upstream http://cbb.big.ac.cn/Zhang_Zhang Package-Manager: portage-2.2.15 sci-biology/KaKs_Calculator/ChangeLog | 10 ++++++ .../KaKs_Calculator/KaKs_Calculator-1.2.ebuild | 38 ++++++++++++++++++++++ sci-biology/KaKs_Calculator/metadata.xml | 9 +++++ 3 files changed, 57 insertions(+) diff --git a/sci-biology/KaKs_Calculator/ChangeLog b/sci-biology/KaKs_Calculator/ChangeLog new file mode 100644 index 0000000..2a3e92f --- /dev/null +++ b/sci-biology/KaKs_Calculator/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/KaKs_Calculator +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*KaKs_Calculator-1.2 (21 Mar 2015) + + 21 Mar 2015; Martin Mokrejs <[email protected]> + +KaKs_Calculator-1.2.ebuild, +metadata.xml: + sci-biology/KaKs_Calculator: new package but code does not compile; awaiting + some answer from upstream http://cbb.big.ac.cn/Zhang_Zhang diff --git a/sci-biology/KaKs_Calculator/KaKs_Calculator-1.2.ebuild b/sci-biology/KaKs_Calculator/KaKs_Calculator-1.2.ebuild new file mode 100644 index 0000000..5d9bb67 --- /dev/null +++ b/sci-biology/KaKs_Calculator/KaKs_Calculator-1.2.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit eutils toolchain-funcs + +DESCRIPTION="Calculate nonsynonymous (Ka) and synonymous (Ks) substitution rates" +HOMEPAGE="https://code.google.com/p/kaks-calculator"; +SRC_URI="https://kaks-calculator.googlecode.com/files/KaKs_Calculator"${PV}".tar.gz + https://kaks-calculator.googlecode.com/files/parseFastaIntoAXT.pl"; + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="sci-biology/ParaAT" +RDEPEND=" + dev-lang/perl + ${DEPEND}" + +S="${WORKDIR}"/KaKs_Calculator"${PV}" + +src_prepare(){ + sed -e "s/^CC = g++/CC="$(tc-getCXX)"/; s/^CFLAGS/#CFLAGS/" -i src/makefile +} + +src_compile(){ + cd src || die + emake +} + +src_install(){ + dobin "${DISTDIR}"/parseFastaIntoAXT.pl + dobin src/{KaKs_Calculator,AXTConvertor,ConPairs} +} diff --git a/sci-biology/KaKs_Calculator/metadata.xml b/sci-biology/KaKs_Calculator/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/KaKs_Calculator/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
