commit: e6aadf2268b6d9cb675653b9c8e3717ca2597298 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Apr 15 08:55:06 2014 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Apr 15 08:55:06 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e6aadf22
sci-biology/nesoni: new package, needs some dev-lang/R -based packages to be installed Package-Manager: portage-2.2.7 --- sci-biology/nesoni/ChangeLog | 10 ++++++++++ sci-biology/nesoni/metadata.xml | 9 +++++++++ sci-biology/nesoni/nesoni-0.117.ebuild | 33 +++++++++++++++++++++++++++++++++ 3 files changed, 52 insertions(+) diff --git a/sci-biology/nesoni/ChangeLog b/sci-biology/nesoni/ChangeLog new file mode 100644 index 0000000..1e9ab42 --- /dev/null +++ b/sci-biology/nesoni/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/nesoni +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*nesoni-0.117 (15 Apr 2014) + + 15 Apr 2014; Martin Mokrejs <[email protected]> +metadata.xml, + +nesoni-0.117.ebuild: + sci-biology/nesoni: new package, needs some dev-lang/R -based packages to be + installed diff --git a/sci-biology/nesoni/metadata.xml b/sci-biology/nesoni/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/nesoni/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/nesoni/nesoni-0.117.ebuild b/sci-biology/nesoni/nesoni-0.117.ebuild new file mode 100644 index 0000000..9f14d79 --- /dev/null +++ b/sci-biology/nesoni/nesoni-0.117.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 eutils + +DESCRIPTION="Analysis package for next-generation sequencing data and prepare for IGV display" +HOMEPAGE="http://www.vicbioinformatics.com/software.nesoni.shtml"; +SRC_URI="http://www.vicbioinformatics.com/"${P}".tar.gz"; + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + sci-biology/shrimp + sci-biology/bowtie + sci-biology/mummer + sci-biology/biopython + sci-biology/picard + dev-lang/R" + + # sci-biology/freebayes + # SplitsTree4 + # BioConductor (limma, edgeR, goseq) + # seriation + # NMF
