commit: 5266b33235bf8ed1645ff353dd6d371d18e34bb4
Author: Honza Macháček <Hloupy.Honza <AT> centrum <DOT> cz>
AuthorDate: Tue Apr 15 14:29:58 2014 +0000
Commit: Honza Macháček <Hloupy.Honza <AT> centrum <DOT> cz>
CommitDate: Tue Apr 15 14:29:58 2014 +0000
URL:
http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5266b332
Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci
sci-libs/etsf_io bumped to version 1.0.4
app-editors/neovim/neovim-9999.ebuild | 1 +
dev-python/ffnet/ChangeLog | 6 +-
dev-python/ffnet/Manifest | 2 +-
.../{ffnet-0.6.2.ebuild => ffnet-0.7.1.ebuild} | 23 +-
dev-python/ffnet/metadata.xml | 10 +-
sci-biology/VelvetOptimiser/ChangeLog | 13 +
sci-biology/VelvetOptimiser/Manifest | 1 +
.../VelvetOptimiser/VelvetOptimiser-2.2.5.ebuild | 29 +
.../VelvetOptimiser}/metadata.xml | 0
sci-biology/barrnap/ChangeLog | 9 +
sci-biology/barrnap/Manifest | 1 +
sci-biology/barrnap/barrnap-0.3.ebuild | 22 +
.../barrnap}/metadata.xml | 0
sci-biology/consed/ChangeLog | 11 +
sci-biology/consed/consed-20-r1.ebuild | 7 +-
sci-biology/consed/consed-21.ebuild | 7 +-
sci-biology/consed/consed-22.ebuild | 7 +-
sci-biology/consed/consed-23.ebuild | 7 +-
sci-biology/consed/consed-24.ebuild | 7 +-
sci-biology/consed/consed-25.ebuild | 7 +-
sci-biology/consed/consed-26.ebuild | 7 +-
sci-biology/consed/consed-27.ebuild | 7 +-
sci-biology/mira/ChangeLog | 5 +
sci-biology/mira/Manifest | 1 +
.../{mira-4.0_rc4.ebuild => mira-4.0.1.ebuild} | 0
sci-biology/nesoni/ChangeLog | 10 +
sci-biology/nesoni/Manifest | 1 +
.../nesoni}/metadata.xml | 0
sci-biology/nesoni/nesoni-0.117.ebuild | 33 +
sci-biology/velvetk/ChangeLog | 9 +
sci-biology/velvetk/Manifest | 1 +
.../velvetk}/metadata.xml | 0
sci-biology/velvetk/velvetk-20120606.ebuild | 29 +
sci-chemistry/gromacs/ChangeLog | 12 +
sci-chemistry/gromacs/Manifest | 4 +-
...cs-5.0_beta1.ebuild => gromacs-5.0.9999.ebuild} | 56 +-
...{gromacs-9999.ebuild => gromacs-5.0_rc1.ebuild} | 51 +-
sci-chemistry/gromacs/gromacs-9999.ebuild | 47 +-
sci-chemistry/gromacs/metadata.xml | 12 +-
sci-libs/dcmtk/ChangeLog | 14 +-
sci-libs/dcmtk/Manifest | 4 +-
sci-libs/dcmtk/dcmtk-3.5.4-r3.ebuild | 71 -
sci-libs/dcmtk/dcmtk-3.5.5_pre20101008.ebuild | 79 -
sci-libs/dcmtk/dcmtk-3.6.0.ebuild | 72 +
sci-libs/dcmtk/files/02_dcmtk_3.6.0-1.patch | 89 +
sci-libs/dcmtk/files/07_doxygen.patch | 1804 ++++++++++++++++++++
sci-libs/dcmtk/files/bug674361.patch | 1015 +++++++++++
sci-libs/dcmtk/files/dcmtk-asneeded.patch | 16 +
sci-libs/dcmtk/files/dcmtk_version_number.patch | 131 ++
sci-libs/dcmtk/files/doubledes.patch | 31 +
sci-libs/dcmtk/files/fixnull.patch | 36 +
sci-libs/dcmtk/files/noleak.patch | 36 +
sci-libs/dcmtk/files/nothrow.patch | 76 +
sci-libs/dcmtk/files/prefs.patch | 26 +
.../files/regression_stacksequenceisodd.patch | 98 ++
.../dcmtk/files/use_correct_number_of_TS.patch | 19 +
sci-libs/dcmtk/metadata.xml | 30 +-
sci-libs/itk/ChangeLog | 11 +
sci-libs/itk/Manifest | 2 +
...p-TransformFileReader-TransformFileWriter.patch | 50 +
...itkQuasiNewtonOptimizerv4-wrapping-warnin.patch | 28 +
...itkGradientDescentOptimizerv4-wrapping-wa.patch | 73 +
...OptimizerParameterScalesEstimatorTemplate.patch | 30 +
.../0005-make-gdcm-helper-library-static.patch | 11 +
sci-libs/itk/files/nrrdio-linking.patch | 15 +
.../itk/{itk-4.4.2-r1.ebuild => itk-4.5.1.ebuild} | 76 +-
sci-mathematics/pulp/ChangeLog | 6 +-
sci-mathematics/pulp/Manifest | 2 +-
.../pulp/{pulp-1.5.3.ebuild => pulp-1.5.6.ebuild} | 16 +-
sci-visualization/visit/visit-2.7.2.ebuild | 6 +
70 files changed, 4124 insertions(+), 304 deletions(-)
