commit: 3b0ca41e88d8131cf6aa944ff3da23ff743bd3a0 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Mar 31 16:19:08 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Mar 31 16:19:08 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3b0ca41e
sci-biology/abacas: new package Package-Manager: portage-2.2.18 sci-biology/abacas/ChangeLog | 9 +++++++++ sci-biology/abacas/abacas-1.3.1.ebuild | 33 +++++++++++++++++++++++++++++++++ sci-biology/abacas/metadata.xml | 9 +++++++++ 3 files changed, 51 insertions(+) diff --git a/sci-biology/abacas/ChangeLog b/sci-biology/abacas/ChangeLog new file mode 100644 index 0000000..7f3ad38 --- /dev/null +++ b/sci-biology/abacas/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/abacas +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*abacas-1.3.1 (31 Mar 2015) + + 31 Mar 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz> + +abacas-1.3.1.ebuild, +metadata.xml: + sci-biology/abacas: new package diff --git a/sci-biology/abacas/abacas-1.3.1.ebuild b/sci-biology/abacas/abacas-1.3.1.ebuild new file mode 100644 index 0000000..e44862d --- /dev/null +++ b/sci-biology/abacas/abacas-1.3.1.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Order and orientate contigs, design primers for gap closing" +HOMEPAGE="http://abacas.sourceforge.net"; +SRC_URI="http://downloads.sourceforge.net/project/abacas/abacas.1.3.1.pl"; + +LICENSE="GPL-2+" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + dev-lang/perl + sci-biology/mummer" + +S="${WORKDIR}" + +src_prepare(){ + cp -p "${DISTDIR}"/abacas.1.3.1.pl abacas.pl || die + sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' -i abacas.pl || die +} +src_install(){ + dobin abacas.pl +} + +pkg_postinst(){ + einfo "To view the results use Artemis ACT (sci-biology/artemis)" +} diff --git a/sci-biology/abacas/metadata.xml b/sci-biology/abacas/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/abacas/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
