commit: 00dbc02291a0af28a173b9b142c47639eb8abbc3 Author: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org> AuthorDate: Tue Jan 27 23:28:12 2026 +0000 Commit: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org> CommitDate: Wed Jan 28 18:30:48 2026 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=00dbc022
sci-biology/mothur: drop 1.48.0 Signed-off-by: Andreas Sturmlechner <asturm <AT> gentoo.org> sci-biology/mothur/Manifest | 1 - sci-biology/mothur/mothur-1.48.0.ebuild | 54 --------------------------------- 2 files changed, 55 deletions(-) diff --git a/sci-biology/mothur/Manifest b/sci-biology/mothur/Manifest index e5cb8a9ee5a7..f553bac75ba0 100644 --- a/sci-biology/mothur/Manifest +++ b/sci-biology/mothur/Manifest @@ -1,2 +1 @@ -DIST mothur-1.48.0.tar.gz 1652711 BLAKE2B 39e1d2a32a63d441267b4e0e739505bdcb3ab392c169c96d60e816dbd9fab6b92745e8a9eaae31062711f2de0130dae540bba34c6bd97e76a921711f58c11f65 SHA512 a43ef6a223238d40e51c15043360ba9cae86347affea2f1a4e365635fb0949981ad32001b88d4061a033b2a002e944df16923a0622a40bf061791f06143467e1 DIST mothur-1.48.2.tar.gz 24702253 BLAKE2B 4342640e70f08763c4bc1605441a9526ef967bd5832d103db3095c470ea82c2c554dd03775e8ffdf02a983ee4dfdb43ba008dcf7ff19b99321a0204843f98710 SHA512 0c3496d08131d15db3933165eba832a135ca3bce8010e7a2b4a84802c91d6f5efa54711498148d7cc190420b75a94babf20d6c435a5e07c730924f1f3f966586 diff --git a/sci-biology/mothur/mothur-1.48.0.ebuild b/sci-biology/mothur/mothur-1.48.0.ebuild deleted file mode 100644 index d4189ee39e9e..000000000000 --- a/sci-biology/mothur/mothur-1.48.0.ebuild +++ /dev/null @@ -1,54 +0,0 @@ -# Copyright 1999-2024 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit flag-o-matic toolchain-funcs - -DESCRIPTION="A suite of algorithms for ecological bioinformatics" -HOMEPAGE="https://mothur.org/"; -SRC_URI="https://github.com/mothur/mothur/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="amd64 ~x86" -IUSE="boost gsl hdf5 mpi +readline" - -RDEPEND=" - sci-biology/uchime - boost? ( dev-libs/boost:=[zlib] ) - gsl? ( sci-libs/gsl:= ) - hdf5? ( sci-libs/hdf5:=[cxx] ) - mpi? ( virtual/mpi ) -" -DEPEND="${RDEPEND}" - -PATCHES=( - "${FILESDIR}"/${PN}-1.48.0-build.patch -) - -src_configure() { - use mpi && export CXX=mpicxx || tc-export CXX - use amd64 && append-cppflags -DBIT_VERSION -} - -src_compile() { - # bug #862273 - append-flags -fno-strict-aliasing - filter-lto - - # USEBOOST - link with boost libraries. Must install boost. Allows the make.contigs command to read .gz files. - # USEHDF5 - link with HDF5cpp libraries. Must install HDF5. Allows the biom.info command to read Biom format 2.0. - # USEGSL - link with GNU Scientific libraries. Must install GSL. Allows the estimiator.single command to find diversity estimates. - emake \ - USEBOOST=$(usex boost) \ - USEHDF5=$(usex hdf5) \ - USEGSL=$(usex gsl) \ - USEMPI=$(usex mpi) \ - USEREADLINE=$(usex readline) \ - OPTIMIZE=no -} - -src_install() { - dobin mothur -}
