commit: 9732eabf702cbf02c054834a7b36463f48f9e2c7 Author: layman <layman <AT> localhost> AuthorDate: Sun Apr 12 16:08:32 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sun Apr 12 16:08:32 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9732eabf
sci-biology/metaseq: add metaseq Package-Manager: portage-2.2.14-prefix sci-biology/metaseq/ChangeLog | 9 +++++++++ sci-biology/metaseq/metadata.xml | 9 +++++++++ sci-biology/metaseq/metaseq-0.5.3.ebuild | 29 +++++++++++++++++++++++++++++ 3 files changed, 47 insertions(+) diff --git a/sci-biology/metaseq/ChangeLog b/sci-biology/metaseq/ChangeLog new file mode 100644 index 0000000..4f473fe --- /dev/null +++ b/sci-biology/metaseq/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/metaseq +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*metaseq-0.5.3 (12 Apr 2015) + + 12 Apr 2015; Michael Schubert <mschu....@gmail.com> +metadata.xml, + +metaseq-0.5.3.ebuild: + sci-biology/metaseq: add metaseq diff --git a/sci-biology/metaseq/metadata.xml b/sci-biology/metaseq/metadata.xml new file mode 100644 index 0000000..b7551a6 --- /dev/null +++ b/sci-biology/metaseq/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mschu....@gmail.com</email> + <name>Michael Schubert</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/metaseq/metaseq-0.5.3.ebuild b/sci-biology/metaseq/metaseq-0.5.3.ebuild new file mode 100644 index 0000000..3c65dbf --- /dev/null +++ b/sci-biology/metaseq/metaseq-0.5.3.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 + +DESCRIPTION="Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data" +HOMEPAGE="http://pythonhosted.org/metaseq/"; +SRC_URI="https://github.com/daler/metaseq/archive/v${PV}.tar.gz"; + +LICENSE="MIT" +SLOT="0" +IUSE="" + +DEPEND="dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/pyyaml[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + sci-biology/pysam[${PYTHON_USEDEP}] + sci-biology/pybedtools[${PYTHON_USEDEP}] + sci-biology/bx-python[${PYTHON_USEDEP}] + sci-biology/gffutils[${PYTHON_USEDEP}] + sci-biology/samtools[${PYTHON_USEDEP}]" +RDEPEND="${DEPEND}"
