commit: aa013962dcd3a5c45b467c96cda43c4bd8e33fad Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Mon Apr 27 11:38:58 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon Apr 27 11:38:58 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=aa013962
sci-biology/BRAKER: new package; somehow RDEPENDs are installed wrongly: Can't locate Scalar/Util/Numeric.pm in @INC (you may need to install the Scalar::Util::Numeric module) Package-Manager: portage-2.2.18 sci-biology/BRAKER/BRAKER-20150330.ebuild | 32 +++++++++++++++++++++++++++++++ sci-biology/BRAKER/ChangeLog | 11 +++++++++++ sci-biology/BRAKER/metadata.xml | 9 +++++++++ 3 files changed, 52 insertions(+) diff --git a/sci-biology/BRAKER/BRAKER-20150330.ebuild b/sci-biology/BRAKER/BRAKER-20150330.ebuild new file mode 100644 index 0000000..9ee5465 --- /dev/null +++ b/sci-biology/BRAKER/BRAKER-20150330.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +PERL_EXPORT_PHASE_FUNCTIONS=no +inherit perl-module + +DESCRIPTION="Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS" +# http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf +HOMEPAGE="http://bioinf.uni-greifswald.de/augustus/downloads"; +SRC_URI=" http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1.tar.gz -> ${P}.tar.gz" + +LICENSE="Artistic" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + virtual/perl-Scalar-List-Utils" + +S="${WORKDIR}" + +src_install(){ + perl_set_version + dobin *.pl + insinto ${VENDOR_LIB}/${PN} + doins *.pm + dodoc README.braker +} diff --git a/sci-biology/BRAKER/ChangeLog b/sci-biology/BRAKER/ChangeLog new file mode 100644 index 0000000..0a1fbb2 --- /dev/null +++ b/sci-biology/BRAKER/ChangeLog @@ -0,0 +1,11 @@ +# ChangeLog for sci-biology/BRAKER +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*BRAKER-20150330 (27 Apr 2015) + + 27 Apr 2015; Martin Mokrejs <[email protected]> + +BRAKER-20150330.ebuild, +metadata.xml: + sci-biology/BRAKER: new package; somehow RDEPENDs are installed wrongly: Can't + locate Scalar/Util/Numeric.pm in @INC (you may need to install the + Scalar::Util::Numeric module) diff --git a/sci-biology/BRAKER/metadata.xml b/sci-biology/BRAKER/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/BRAKER/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
