[gentoo-commits] proj/sci:master commit in: sci-biology/jellyfish/

[Martin Mokrejs]

commit:     50d3d1d5b5c59652a2348b4105490cc698125b89
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Apr 30 10:10:36 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Apr 30 10:10:36 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=50d3d1d5

sci-biology/jellyfish: version bump; ebuild cleanup

Package-Manager: portage-2.2.18

 sci-biology/jellyfish/jellyfish-2.1.3.ebuild                          | 4 ++--
 .../jellyfish/{jellyfish-2.1.3.ebuild => jellyfish-2.1.4.ebuild}      | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/sci-biology/jellyfish/jellyfish-2.1.3.ebuild 
b/sci-biology/jellyfish/jellyfish-2.1.3.ebuild
index c217e42..0d45b48 100644
--- a/sci-biology/jellyfish/jellyfish-2.1.3.ebuild
+++ b/sci-biology/jellyfish/jellyfish-2.1.3.ebuild
@@ -6,7 +6,7 @@ EAPI=5
 
 DESCRIPTION="k-mer counter within reads for assemblies"
 HOMEPAGE="http://www.genome.umd.edu/jellyfish.html";
-SRC_URI="ftp://ftp.genome.umd.edu/pub/jellyfish/jellyfish-2.1.3.tar.gz
+SRC_URI="ftp://ftp.genome.umd.edu/pub/${PN}/${P}.tar.gz
        ftp://ftp.genome.umd.edu/pub/jellyfish/JellyfishUserGuide.pdf";
 
 # older version is hidden in 
trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11
@@ -21,7 +21,7 @@ RDEPEND="${DEPEND}"
 
 src_install(){
        default
-       sed -e 's#jellyfish-2.1.3#jellyfish#' -i 
"${D}"/usr/lib64/pkgconfig/jellyfish-2.0.pc || die
+       sed -e "s#jellyfish-${PV}#jellyfish#" -i 
"${D}"/usr/lib64/pkgconfig/jellyfish-2.0.pc || die
        mkdir -p "${D}/usr/include/${PN}" || die
        mv "${D}"/usr/include/"${P}"/"${PN}"/* "${D}/usr/include/${PN}/" || die
        rm -rf "${D}/usr/include/${P}"

diff --git a/sci-biology/jellyfish/jellyfish-2.1.3.ebuild 
b/sci-biology/jellyfish/jellyfish-2.1.4.ebuild
similarity index 83%
copy from sci-biology/jellyfish/jellyfish-2.1.3.ebuild
copy to sci-biology/jellyfish/jellyfish-2.1.4.ebuild
index c217e42..0d45b48 100644
--- a/sci-biology/jellyfish/jellyfish-2.1.3.ebuild
+++ b/sci-biology/jellyfish/jellyfish-2.1.4.ebuild
@@ -6,7 +6,7 @@ EAPI=5
 
 DESCRIPTION="k-mer counter within reads for assemblies"
 HOMEPAGE="http://www.genome.umd.edu/jellyfish.html";
-SRC_URI="ftp://ftp.genome.umd.edu/pub/jellyfish/jellyfish-2.1.3.tar.gz
+SRC_URI="ftp://ftp.genome.umd.edu/pub/${PN}/${P}.tar.gz
        ftp://ftp.genome.umd.edu/pub/jellyfish/JellyfishUserGuide.pdf";
 
 # older version is hidden in 
trinityrnaseq_r20140413p1/trinity-plugins/jellyfish-1.1.11
@@ -21,7 +21,7 @@ RDEPEND="${DEPEND}"
 
 src_install(){
        default
-       sed -e 's#jellyfish-2.1.3#jellyfish#' -i 
"${D}"/usr/lib64/pkgconfig/jellyfish-2.0.pc || die
+       sed -e "s#jellyfish-${PV}#jellyfish#" -i 
"${D}"/usr/lib64/pkgconfig/jellyfish-2.0.pc || die
        mkdir -p "${D}/usr/include/${PN}" || die
        mv "${D}"/usr/include/"${P}"/"${PN}"/* "${D}/usr/include/${PN}/" || die
        rm -rf "${D}/usr/include/${P}"