[gentoo-commits] proj/sci:master commit in: sci-biology/MaSuRCA/

[Martin Mokrejs]

commit:     fbb39ffdcd8232fb3e7346355f4d7b50eb429dc1
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Apr 30 21:16:20 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Apr 30 21:16:20 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=fbb39ffd

sci-biology/MaSuRCA: version bump

Package-Manager: portage-2.2.18

 sci-biology/MaSuRCA/ChangeLog                      |  8 ++++++-
 ...{MaSuRCA-2.1.0.ebuild => MaSuRCA-2.3.2b.ebuild} | 26 +++++++++-------------
 2 files changed, 17 insertions(+), 17 deletions(-)

diff --git a/sci-biology/MaSuRCA/ChangeLog b/sci-biology/MaSuRCA/ChangeLog
index e9d6a2c..4014eea 100644
--- a/sci-biology/MaSuRCA/ChangeLog
+++ b/sci-biology/MaSuRCA/ChangeLog
@@ -1,7 +1,13 @@
 # ChangeLog for sci-biology/MaSuRCA
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*MaSuRCA-2.3.2b (30 Apr 2015)
+
+  30 Apr 2015; Martin Mokrejs <mmokr...@fold.natur.cuni.cz>
+  +MaSuRCA-2.3.2b.ebuild, -MaSuRCA-2.1.0.ebuild:
+  sci-biology/MaSuRCA: version bump
+
   16 Sep 2014; Christoph Junghans <ott...@gentoo.org> MaSuRCA-2.1.0.ebuild:
   added license
 

diff --git a/sci-biology/MaSuRCA/MaSuRCA-2.1.0.ebuild 
b/sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild
similarity index 67%
rename from sci-biology/MaSuRCA/MaSuRCA-2.1.0.ebuild
rename to sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild
index 04e8172..01eeeeb 100644
--- a/sci-biology/MaSuRCA/MaSuRCA-2.1.0.ebuild
+++ b/sci-biology/MaSuRCA/MaSuRCA-2.3.2b.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -16,33 +16,27 @@ IUSE=""
 
 DEPEND="dev-lang/perl
                app-arch/bzip2"
-RDEPEND="${DEPEND}"
-       #sci-biology/quorum"
+RDEPEND="${DEPEND}
+       >=sci-biology/quorum-0.2.1
+       >=sci-biology/jellyfish-1.1.11"
 
 # the ebuild mimics "${S}"/install.sh
 src_configure(){
-       cd jellyfish-1.1.11 || die
+       cd jellyfish || die
        econf
 
-       cd ../jellyfish-2.0.0rc1 || die
-       econf --program-suffix=-2.0
-
        cd ../CA/kmer || die
-       sh ./configure.sh
        econf
 
-       cd ../../SuperReads-0.3.2 || die
+       cd ../../SuperReads || die
        econf
 
-       cd ../quorum-0.3.2 || die
+       cd ../quorum || die
        econf --enable-relative-paths --with-relative-jf-path
 }
 
 src_compile(){
-       cd jellyfish-1.1.11 || die
-       emake
-
-       cd ../jellyfish-2.0.0rc1 || die
+       cd jellyfish || die
        emake
 
        cd ../CA/kmer || die
@@ -51,10 +45,10 @@ src_compile(){
        cd ../../CA/src || die
        emake
 
-       cd ../SuperReads-0.3.2 || die
+       cd ../SuperReads || die
        emake
 
-       cd ../quorum-0.3.2 || die
+       cd ../quorum || die
        emake
 }