jlec 15/07/03 13:08:20
Modified: theseus-2.0.6.ebuild theseus-3.0.0.ebuild ChangeLog
Added: theseus-3.3.0.ebuild
Removed: theseus-1.6.2-r1.ebuild theseus-2.0.1-r1.ebuild
theseus-2.0.3.ebuild
Log:
Version Bump; drop old
(Portage version: 2.2.20/cvs/Linux x86_64, signed Manifest commit with key
E9402A79B03529A2!)
Revision Changes Path
1.2 sci-chemistry/theseus/theseus-2.0.6.ebuild
file :
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/theseus/theseus-2.0.6.ebuild?rev=1.2&view=markup
plain:
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/theseus/theseus-2.0.6.ebuild?rev=1.2&content-type=text/plain
diff :
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/theseus/theseus-2.0.6.ebuild?r1=1.1&r2=1.2
Index: theseus-2.0.6.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/theseus/theseus-2.0.6.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- theseus-2.0.6.ebuild 6 Jun 2013 14:17:55 -0000 1.1
+++ theseus-2.0.6.ebuild 3 Jul 2015 13:08:20 -0000 1.2
@@ -1,6 +1,6 @@
-# Copyright 1999-2013 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header:
/var/cvsroot/gentoo-x86/sci-chemistry/theseus/theseus-2.0.6.ebuild,v 1.1
2013/06/06 14:17:55 jlec Exp $
+# $Header:
/var/cvsroot/gentoo-x86/sci-chemistry/theseus/theseus-2.0.6.ebuild,v 1.2
2015/07/03 13:08:20 jlec Exp $
EAPI=5
@@ -23,7 +23,7 @@
sci-biology/mafft
sci-biology/t-coffee
sci-biology/kalign
- sci-biology/clustalw
+ sci-biology/clustalw:2
)"
DEPEND="${RDEPEND}
virtual/pkgconfig"
1.2 sci-chemistry/theseus/theseus-3.0.0.ebuild
file :
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/theseus/theseus-3.0.0.ebuild?rev=1.2&view=markup
plain:
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/theseus/theseus-3.0.0.ebuild?rev=1.2&content-type=text/plain
diff :
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/theseus/theseus-3.0.0.ebuild?r1=1.1&r2=1.2
Index: theseus-3.0.0.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/theseus/theseus-3.0.0.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- theseus-3.0.0.ebuild 13 Nov 2014 10:58:13 -0000 1.1
+++ theseus-3.0.0.ebuild 3 Jul 2015 13:08:20 -0000 1.2
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header:
/var/cvsroot/gentoo-x86/sci-chemistry/theseus/theseus-3.0.0.ebuild,v 1.1
2014/11/13 10:58:13 jlec Exp $
+# $Header:
/var/cvsroot/gentoo-x86/sci-chemistry/theseus/theseus-3.0.0.ebuild,v 1.2
2015/07/03 13:08:20 jlec Exp $
EAPI=5
@@ -23,7 +23,7 @@
sci-biology/mafft
sci-biology/t-coffee
sci-biology/kalign
- sci-biology/clustalw
+ sci-biology/clustalw:2
)"
DEPEND="${RDEPEND}
virtual/pkgconfig"
@@ -58,6 +58,11 @@
-i theseus_align || die
}
+src_compile () {
+ emake ltheseus
+ default
+}
+
src_install() {
dobin theseus theseus_align
dodoc theseus_man.pdf README AUTHORS
1.11 sci-chemistry/theseus/ChangeLog
file :
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/theseus/ChangeLog?rev=1.11&view=markup
plain:
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/theseus/ChangeLog?rev=1.11&content-type=text/plain
diff :
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/theseus/ChangeLog?r1=1.10&r2=1.11
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/theseus/ChangeLog,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -r1.10 -r1.11
--- ChangeLog 7 Apr 2015 14:39:31 -0000 1.10
+++ ChangeLog 3 Jul 2015 13:08:20 -0000 1.11
@@ -1,6 +1,13 @@
# ChangeLog for sci-chemistry/theseus
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/theseus/ChangeLog,v 1.10
2015/04/07 14:39:31 jlec Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/theseus/ChangeLog,v 1.11
2015/07/03 13:08:20 jlec Exp $
+
+*theseus-3.3.0 (03 Jul 2015)
+
+ 03 Jul 2015; Justin Lecher <j...@gentoo.org> +theseus-3.3.0.ebuild,
+ -theseus-1.6.2-r1.ebuild, -theseus-2.0.1-r1.ebuild, -theseus-2.0.3.ebuild,
+ theseus-2.0.6.ebuild, theseus-3.0.0.ebuild:
+ Version Bump; drop old
*theseus-3.0.0 (13 Nov 2014)
@@ -47,4 +54,3 @@
21 Mar 2012; Justin Lecher <j...@gentoo.org> +theseus-1.6.2.ebuild,
+metadata.xml:
New addition, written by me
-
1.1 sci-chemistry/theseus/theseus-3.3.0.ebuild
file :
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/theseus/theseus-3.3.0.ebuild?rev=1.1&view=markup
plain:
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/theseus/theseus-3.3.0.ebuild?rev=1.1&content-type=text/plain
Index: theseus-3.3.0.ebuild
===================================================================
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/theseus/theseus-3.3.0.ebuild,v
1.1 2015/07/03 13:08:20 jlec Exp $
EAPI=5
inherit multilib toolchain-funcs
DESCRIPTION="Maximum likelihood superpositioning and analysis of macromolecular
structures"
HOMEPAGE="http://www.theseus3d.org/";
SRC_URI="http://www.theseus3d.org/src/${PN}_${PV}.tar.gz";
SLOT="0"
LICENSE="GPL-3"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="examples"
RDEPEND="
sci-libs/gsl
|| (
sci-biology/muscle
sci-biology/probcons
sci-biology/mafft
sci-biology/t-coffee
sci-biology/kalign
sci-biology/clustalw:2
)"
DEPEND="${RDEPEND}
virtual/pkgconfig"
S="${WORKDIR}"/${PN}_src/
src_prepare() {
cat >> make.inc <<- EOF
ARCH = $(tc-getAR)
ARCHFLAGS = -rvs
RANLIB = $(tc-getRANLIB)
LOCALLIBDIR = "${EPREFIX}/usr/$(get_libdir)
SYSLIBS = $(pkg-config --libs gsl) -lpthread
LIBS = -ldistfit -lmsa -ldssplite -ldltmath -lDLTutils -ltheseus
LIBDIR = -L./lib
INSTALLDIR = "${ED}"/usr/bin
OPT =
WARN =
CFLAGS = ${CFLAGS} -std=c11 \$(WARN)
CC = $(tc-getCC)
EOF
sed \
-e 's|theseus:|theseus: libs|g' \
-e '/-o theseus/s:$(CC):$(CC) ${LDFLAGS}:g' \
-i Makefile || die
sed \
-e 's:/usr/bin/sed:sed:g' \
-e "s:/usr/local/bin/:/usr/bin/:g" \
-e "s:/usr/bin/:${EPREFIX}/usr/bin/:g" \
-i theseus_align || die
}
src_compile () {
emake ltheseus
default
}
src_install() {
dobin theseus theseus_align
dodoc theseus_man.pdf README AUTHORS
use examples && insinto /usr/share/${PN} && doins -r examples
}
