jlec 15/07/27 18:42:15
Modified: ChangeLog
Added: mothur-1.27.0-r1.ebuild
Removed: mothur-1.13.0-r1.ebuild mothur-1.13.0-r2.ebuild
mothur-1.27.0.ebuild
Log:
Use fortran-2.eclass, bug #543204; drop old
(Portage version: 2.2.20/cvs/Linux x86_64, signed Manifest commit with key
E9402A79B03529A2!)
Revision Changes Path
1.13 sci-biology/mothur/ChangeLog
file :
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mothur/ChangeLog?rev=1.13&view=markup
plain:
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mothur/ChangeLog?rev=1.13&content-type=text/plain
diff :
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mothur/ChangeLog?r1=1.12&r2=1.13
Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/mothur/ChangeLog,v
retrieving revision 1.12
retrieving revision 1.13
diff -u -r1.12 -r1.13
--- ChangeLog 7 Apr 2015 14:33:37 -0000 1.12
+++ ChangeLog 27 Jul 2015 18:42:15 -0000 1.13
@@ -1,6 +1,14 @@
# ChangeLog for sci-biology/mothur
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/ChangeLog,v 1.12
2015/04/07 14:33:37 jlec Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/ChangeLog,v 1.13
2015/07/27 18:42:15 jlec Exp $
+
+*mothur-1.27.0-r1 (27 Jul 2015)
+
+ 27 Jul 2015; Justin Lecher <[email protected]> +mothur-1.27.0-r1.ebuild,
+ -files/mothur-1.13.0-makefile.patch, -files/mothur-1.13.0-overflows.patch,
+ -files/mothur-1.13.0-overflows2.patch, -mothur-1.13.0-r1.ebuild,
+ -mothur-1.13.0-r2.ebuild, -mothur-1.27.0.ebuild:
+ Use fortran-2.eclass, bug #543204; drop old
11 Mar 2013; Justin Lecher <[email protected]> metadata.xml:
Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
@@ -61,4 +69,3 @@
04 Mar 2009; Andrey Kislyuk <[email protected]> ChangeLog:
New package, ebuild written by me
-
1.1 sci-biology/mothur/mothur-1.27.0-r1.ebuild
file :
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mothur/mothur-1.27.0-r1.ebuild?rev=1.1&view=markup
plain:
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/mothur/mothur-1.27.0-r1.ebuild?rev=1.1&content-type=text/plain
Index: mothur-1.27.0-r1.ebuild
===================================================================
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/mothur-1.27.0-r1.ebuild,v
1.1 2015/07/27 18:42:15 jlec Exp $
EAPI=5
inherit eutils flag-o-matic fortran-2 toolchain-funcs
DESCRIPTION="A suite of algorithms for ecological bioinformatics"
HOMEPAGE="http://www.mothur.org/";
SRC_URI="http://www.mothur.org/w/images/c/cb/Mothur.${PV}.zip -> ${P}.zip"
LICENSE="GPL-3"
SLOT="0"
IUSE="mpi +readline"
KEYWORDS="~amd64 ~x86"
RDEPEND="
sci-biology/uchime
mpi? ( virtual/mpi )"
DEPEND="${RDEPEND}
app-arch/unzip"
S=${WORKDIR}/Mothur.source
pkg_setup() {
fortran-2_pkg_setup
use mpi && export CXX=mpicxx || export CXX=$(tc-getCXX)
use amd64 && append-cppflags -DBIT_VERSION
}
src_prepare() {
epatch \
"${FILESDIR}"/${P}-makefile.patch \
"${FILESDIR}"/${P}-overflows.patch
}
src_compile() {
emake USEMPI=$(usex mpi) USEREADLINE=$(usex readline)
}
src_install() {
dobin ${PN}
}
