monsieurp 15/08/05 14:02:36
Added: biojava-1.7.ebuild biojava-1.6.ebuild ChangeLog
metadata.xml
Log:
pkgmove from dev-java/ to sci-biology/
Signed-off-by: Patrice Clement <monsie...@gentoo.org>
(Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key
93491BB8)
Revision Changes Path
1.1 sci-biology/biojava/biojava-1.7.ebuild
file :
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biojava/biojava-1.7.ebuild?rev=1.1&view=markup
plain:
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biojava/biojava-1.7.ebuild?rev=1.1&content-type=text/plain
Index: biojava-1.7.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/biojava/biojava-1.7.ebuild,v 1.1
2015/08/05 14:02:36 monsieurp Exp $
# TODO:
# -Fix javadoc generation OutOfMemoryError
# -Add launchers for 2 apps in biojava-apps.jar
# -Decide on demo packaging. (Whether to install its jar as done or sources by
examples USE flag)
EAPI=2
#JAVA_PKG_IUSE="doc source test"
JAVA_PKG_IUSE="source test"
inherit eutils java-pkg-2 java-ant-2
DESCRIPTION="A Java framework for processing biological data"
HOMEPAGE="http://biojava.org";
SRC_URI="http://www.biojava.org/download/bj17/all/${P}-all.jar";
LICENSE="LGPL-2.1"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
COMMON_DEPEND="dev-java/jgrapht:0
dev-java/commons-cli:1
dev-java/commons-dbcp:0
dev-java/commons-pool:0
dev-java/commons-collections:0
dev-java/bytecode:0"
RDEPEND=">=virtual/jre-1.5
${COMMON_DEPEND}"
DEPEND=">=virtual/jdk-1.5
app-arch/unzip
${COMMON_DEPEND}
test?
(
dev-java/junit:4
dev-java/ant-junit4
)"
S="${WORKDIR}/biojava-${PV}"
JAVA_ANT_IGNORE_SYSTEM_CLASSES="true"
src_prepare() {
einfo "Removing bundled jars..."
find . -name "*.jar" -print -delete
java-pkg_jar-from jgrapht jgrapht.jar jgrapht-jdk1.5.jar
java-pkg_jar-from commons-cli-1
java-pkg_jar-from commons-dbcp commons-dbcp.jar commons-dbcp-1.1.jar
java-pkg_jar-from commons-pool commons-pool.jar commons-pool-1.1.jar
java-pkg_jar-from bytecode
}
src_compile() {
#ANT_OPTS="${ANT_OPTS} -Xmx512m"
eant package-biojava package-biojava package-demos package-apps
#$(use_doc javadocs-all)
}
src_install() {
java-pkg_newjar ant-build/biojava.jar ${PN}.jar
java-pkg_newjar ant-build/apps.jar ${PN}-apps.jar
java-pkg_newjar ant-build/demos.jar ${PN}-demos.jar
#use doc && java-pkg_dojavadoc ant-build/doc/{biojava,apps,demos}
use source && java-pkg_dosrc {src,apps,demos}/org
}
src_test() {
java-pkg_jar-from junit-4 junit.jar junit-4.4.jar
ANT_TASKS="ant-junit4" eant runtests
}
1.1 sci-biology/biojava/biojava-1.6.ebuild
file :
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biojava/biojava-1.6.ebuild?rev=1.1&view=markup
plain:
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biojava/biojava-1.6.ebuild?rev=1.1&content-type=text/plain
Index: biojava-1.6.ebuild
===================================================================
# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/biojava/biojava-1.6.ebuild,v 1.1
2015/08/05 14:02:36 monsieurp Exp $
# TODO:
# -Fix javadoc generation OutOfMemoryError
# -Add launchers for 2 apps in biojava-apps.jar
# -Decide on demo packaging. (Whether to install its jar as done or sources by
examples USE flag)
EAPI=2
#JAVA_PKG_IUSE="doc source test"
JAVA_PKG_IUSE="source test"
inherit eutils java-pkg-2 java-ant-2
DESCRIPTION="A Java framework for processing biological data"
HOMEPAGE="http://biojava.org";
SRC_URI="http://www.biojava.org/download/bj16/all/${P}-all.jar";
LICENSE="LGPL-2.1"
SLOT="0"
KEYWORDS="~amd64"
IUSE=""
COMMON_DEPEND="dev-java/jgrapht:0
dev-java/commons-cli:1
dev-java/commons-dbcp:0
dev-java/commons-pool:0
dev-java/bytecode:0"
RDEPEND=">=virtual/jre-1.5
${COMMON_DEPEND}"
DEPEND=">=virtual/jdk-1.5
app-arch/unzip
${COMMON_DEPEND}
test?
(
dev-java/junit:4
dev-java/ant-junit4
)"
S="${WORKDIR}/biojava-live_${PV}"
JAVA_ANT_IGNORE_SYSTEM_CLASSES="true"
src_prepare() {
einfo "Removing budled jars."
find . -name "*.jar" -print -delete
rm -r doc/*
java-pkg_jar-from jgrapht jgrapht.jar jgrapht-jdk1.5.jar
java-pkg_jar-from commons-cli-1
java-pkg_jar-from commons-dbcp commons-dbcp.jar commons-dbcp-1.1.jar
java-pkg_jar-from commons-pool commons-pool.jar commons-pool-1.1.jar
java-pkg_jar-from bytecode
}
src_compile() {
#ANT_OPTS="${ANT_OPTS} -Xmx512m"
eant package-biojava package-biojava package-demos package-apps
#$(use_doc javadocs-all)
}
src_install() {
java-pkg_newjar ant-build/biojava.jar ${PN}.jar
java-pkg_newjar ant-build/apps.jar ${PN}-apps.jar
java-pkg_newjar ant-build/demos.jar ${PN}-demos.jar
#use doc && java-pkg_dojavadoc ant-build/doc/{biojava,apps,demos}
use source && java-pkg_dosrc {src,apps,demos}/org
}
src_test() {
java-pkg_jar-from junit-4 junit.jar junit-4.4.jar
ANT_TASKS="ant-junit4" eant runtests
}
1.1 sci-biology/biojava/ChangeLog
file :
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biojava/ChangeLog?rev=1.1&view=markup
plain:
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biojava/ChangeLog?rev=1.1&content-type=text/plain
Index: ChangeLog
===================================================================
# ChangeLog for dev-java/biojava
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/biojava/ChangeLog,v 1.1
2015/08/05 14:02:36 monsieurp Exp $
24 May 2014; Pacho Ramos <pa...@gentoo.org> metadata.xml:
Cleanup due #199047
20 Mar 2010; Petteri Räty <betelge...@gentoo.org> biojava-1.7.ebuild:
Keyword ~x86.
*biojava-1.7 (10 Jul 2009)
10 Jul 2009; Andrey Kislyuk <wea...@gentoo.org> +biojava-1.7.ebuild:
Version bump
07 Feb 2009; weaver <wea...@gentoo.org> metadata.xml:
Assume ownership
*biojava-1.6 (25 Jan 2009)
25 Jan 2009; weaver <wea...@gentoo.org> +metadata.xml,
+biojava-1.6.ebuild:
Import from Java overlay, thanks to serkan
22 Jan 2009; Alistair Bush <ali_b...@gentoo.org> ChangeLog:
Add ChangeLog for QA.
1.1 sci-biology/biojava/metadata.xml
file :
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biojava/metadata.xml?rev=1.1&view=markup
plain:
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biojava/metadata.xml?rev=1.1&content-type=text/plain
Index: metadata.xml
===================================================================
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
<pkgmetadata>
<herd>sci-biology</herd>
<herd>java</herd>
</pkgmetadata>
