commit: b58a3731dfe70002406cbb604dccc6430da4177d Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Fri Aug 7 13:33:16 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Fri Aug 7 13:33:16 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b58a3731
sci-biology/inGAP-bin: Fix CAT move and many more things Package-Manager: portage-2.2.20 Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> sci-biology/inGAP-bin/ChangeLog | 5 ++++- sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild | 22 ++++++++++++---------- 2 files changed, 16 insertions(+), 11 deletions(-) diff --git a/sci-biology/inGAP-bin/ChangeLog b/sci-biology/inGAP-bin/ChangeLog index c573f62..7d0b57b 100644 --- a/sci-biology/inGAP-bin/ChangeLog +++ b/sci-biology/inGAP-bin/ChangeLog @@ -1,7 +1,10 @@ # ChangeLog for sci-biology/inGAP-bin -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 07 Aug 2015; Justin Lecher <[email protected]> inGAP-bin-3.0.1.ebuild: + sci-biology/inGAP-bin: Fix CAT move and many more things + *inGAP-bin-3.0.1 (23 Mar 2014) 23 Mar 2014; Martin Mokrejs <[email protected]> diff --git a/sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild b/sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild index 0c7903c..ebe1350 100644 --- a/sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild +++ b/sci-biology/inGAP-bin/inGAP-bin-3.0.1.ebuild @@ -1,14 +1,17 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ -EAPI=3 +EAPI=5 MY_PV="3_0_1" S="${WORKDIR}"/inGAP_"${MY_PV}" +inherit java-utils-2 + DESCRIPTION="Detect SNPs and indels from Next-gen sequences using a Bayesian algorithm" -HOMEPAGE="http://sites.google.com/site/nextgengenomics/ingap +HOMEPAGE=" + http://sites.google.com/site/nextgengenomics/ingap http://sourceforge.net/projects/ingap/"; SRC_URI="http://sourceforge.net/projects/ingap/files/ingap/v"${PV}"/inGAP_"${MY_PV}".tgz"; @@ -17,23 +20,22 @@ SLOT="0" KEYWORDS="~amd64" IUSE="" -DEPEND="" +DEPEND=">=virtual/jre-1.7" RDEPEND="${DEPEND} dev-java/jfreechart dev-java/swing-layout dev-java/jcommon dev-java/itext dev-java/bytecode - dev-java/biojava + sci-biology/biojava dev-java/absolutelayout" # gnujaxp ? src_install(){ - dobin inGAP.jar || die + java-pkg_dojar inGAP.jar + java-pkg_dolauncher inGAP --jar inGAP.jar # dobin external/bin/{primer3_core, run_cpp, trf} - mv manual.pdf inGAP_Manual.pdf || die - dodoc inGAP_Manual.pdf || die - insinto /usr/share/inGAP - doins doc/manual.htm + newdoc manual.pdf inGAP_Manual.pdf + dodoc doc/manual.htm insinto /usr/share/inGAP/manual_files doins doc/manual_files/*.png }
