commit: 65da06ae6c6b80c958e4179df93c350c279968cc Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Mon Sep 21 17:21:47 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Mon Sep 21 17:21:47 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=65da06ae
sci-biology/fsl: Add subslot operators Package-Manager: portage-2.2.20.1 Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> sci-biology/fsl/fsl-5.0.6.ebuild | 130 --------------------------------------- sci-biology/fsl/fsl-5.0.8.ebuild | 32 +++++----- 2 files changed, 17 insertions(+), 145 deletions(-) diff --git a/sci-biology/fsl/fsl-5.0.6.ebuild b/sci-biology/fsl/fsl-5.0.6.ebuild deleted file mode 100644 index ed0ae88..0000000 --- a/sci-biology/fsl/fsl-5.0.6.ebuild +++ /dev/null @@ -1,130 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -inherit eutils toolchain-funcs prefix - -DESCRIPTION="Analysis of functional, structural, and diffusion MRI brain imaging data" -HOMEPAGE="http://www.fmrib.ox.ac.uk/fsl"; -SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}-sources.tar.gz"; - -LICENSE="FSL BSD-2 newmat" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -COMMON_DEPEND="media-libs/glu - media-libs/libpng - media-libs/gd - sys-libs/zlib - dev-libs/boost - media-gfx/graphviz - " -DEPEND="${COMMON_DEPEND}" -RDEPEND="${COMMON_DEPEND} - dev-lang/tcl - dev-lang/tk - " - -S=${WORKDIR}/${PN} - -src_prepare(){ - epatch "${FILESDIR}/${PN}"-5.0.4-setup.patch - epatch "${FILESDIR}/${PN}"-5.0.4-headers.patch - epatch "${FILESDIR}/${PN}"-5.0.6-fsldir_redux.patch - - sed -i \ - -e "s:@@GENTOO_RANLIB@@:$(tc-getRANLIB):" \ - -e "s:@@GENTOO_CC@@:$(tc-getCC):" \ - -e "s:@@GENTOO_CXX@@:$(tc-getCXX):" \ - config/generic/systemvars.mk || die - - eprefixify $(grep -rl GENTOO_PORTAGE_EPREFIX src/*) \ - etc/js/label-div.html - - makefilelist=$(find src/ -name Makefile) - - sed -i \ - -e "s:-I\${INC_BOOST}::" \ - -e "s:-I\${INC_ZLIB}::" \ - -e "s:-I\${INC_GD}::" \ - -e "s:-I\${INC_PNG}::" \ - -e "s:-L\${LIB_GD}::" \ - -e "s:-L\${LIB_PNG}::" \ - -e "s:-L\${LIB_ZLIB}::" \ - ${makefilelist} || die - - sed -i "s:\${FSLDIR}/bin/::g" \ - $(grep -rl "\${FSLDIR}/bin" src/*) \ - $(grep -rl "\${FSLDIR}/bin" etc/matlab/*) - sed -i "s:\$FSLDIR/bin/::g" \ - $(grep -rl "\$FSLDIR/bin" src/*) \ - $(grep -rl "\$FSLDIR/bin" etc/matlab/*) - - sed -i "s:\$FSLDIR/data:${EPREFIX}/usr/share/fsl/data:g" \ - $(grep -rl "\$FSLDIR/data" src/*) - - sed -i "s:\${FSLDIR}/data:${EPREFIX}/usr/share/fsl/data:g" \ - $(grep -rl "\${FSLDIR}/data" src/*) - - sed -i "s:\$FSLDIR/etc:${EPREFIX}/etc:g" \ - $(grep -rl "\$FSLDIR/etc" src/*) - - sed -i "s:\${FSLDIR}/etc:${EPREFIX}/etc:g" \ - $(grep -rl "\${FSLDIR}/etc" src/*) - - sed -i "s:\$FSLDIR/doc:${EPREFIX}/usr/share/fsl/doc:g" \ - $(grep -rl "\$FSLDIR/doc" src/*) - - sed -i "s:\${FSLDIR}/doc:${EPREFIX}/usr/share/fsl/doc:g" \ - $(grep -rl "\${FSLDIR}/doc" src/*) - - sed -i "s:\'\${FSLDIR}\'/doc:${EPREFIX}/usr/share/fsl/doc:g" \ - $(grep -rl "\'\${FSLDIR}\'/doc" src/*) - - sed -i -e "s:\$FSLDIR/etc:/etc:g" `grep -rlI \$FSLDIR/etc *` -} - -src_compile() { - export FSLDIR=${WORKDIR}/${PN} - export FSLCONDIR=${WORKDIR}/${PN}/config - export FSLMACHTYPE=generic - - export USERLDFLAGS="${LDFLAGS}" - export USERCFLAGS="${CFLAGS}" - export USERCXXFLAGS="${CXXFLAGS}" - - ./build || die -} - -src_install() { - sed -i "s:\${FSLDIR}/tcl:/usr/libexec/fsl:g" \ - $(grep -lI "\${FSLDIR}/tcl" bin/*) \ - $(grep -l "\${FSLDIR}/tcl" tcl/*) - sed -i "s:\$FSLDIR/tcl:/usr/libexec/fsl:g" \ - $(grep -l "\$FSLDIR/tcl" tcl/*) - - exeinto /usr/bin - doexe bin/* - - insinto /usr/share/${PN} - doins -r doc data refdoc - - insinto /usr/libexec/fsl - doins -r tcl/* - - insinto /etc/fslconf - doins etc/fslconf/fsl.sh - - insinto /etc - doins etc/fslversion - doins -r etc/default_flobs.flobs etc/flirtsch etc/js etc/luts - #if use matlab; then - # doins etc/matlab - #fi - - doenvd "${FILESDIR}"/99fsl - rm "${D}"/usr/bin/cluster -} diff --git a/sci-biology/fsl/fsl-5.0.8.ebuild b/sci-biology/fsl/fsl-5.0.8.ebuild index 4bf38ff..f82d5fe 100644 --- a/sci-biology/fsl/fsl-5.0.8.ebuild +++ b/sci-biology/fsl/fsl-5.0.8.ebuild @@ -15,25 +15,27 @@ SLOT="0" KEYWORDS="~amd64" IUSE="" -COMMON_DEPEND="media-libs/glu - media-libs/libpng - media-libs/gd - sys-libs/zlib +COMMON_DEPEND=" dev-libs/boost media-gfx/graphviz + media-libs/gd + media-libs/glu + media-libs/libpng:0= + sys-libs/zlib " DEPEND="${COMMON_DEPEND}" RDEPEND="${COMMON_DEPEND} - dev-lang/tcl - dev-lang/tk + dev-lang/tcl:0= + dev-lang/tk:0= " S=${WORKDIR}/${PN} src_prepare(){ - epatch "${FILESDIR}/${PN}"-5.0.8-setup.patch - epatch "${FILESDIR}/${PN}"-5.0.8-headers.patch - epatch "${FILESDIR}/${PN}"-5.0.8-fsldir_redux.patch + epatch \ + "${FILESDIR}/${PN}"-5.0.8-setup.patch \ + "${FILESDIR}/${PN}"-5.0.8-headers.patch \ + "${FILESDIR}/${PN}"-5.0.8-fsldir_redux.patch sed -i \ -e "s:@@GENTOO_RANLIB@@:$(tc-getRANLIB):" \ @@ -102,15 +104,15 @@ src_compile() { src_install() { sed -i "s:\${FSLDIR}/tcl:/usr/libexec/fsl:g" \ $(grep -lI "\${FSLDIR}/tcl" bin/*) \ - $(grep -l "\${FSLDIR}/tcl" tcl/*) + $(grep -l "\${FSLDIR}/tcl" tcl/*) || die sed -i "s:\$FSLDIR/tcl:/usr/libexec/fsl:g" \ - $(grep -l "\$FSLDIR/tcl" tcl/*) + $(grep -l "\$FSLDIR/tcl" tcl/*) || die - exeinto /usr/bin - doexe bin/* + dobin bin/* insinto /usr/share/${PN} - doins -r doc data refdoc + doins -r data + dodoc -r doc/. refdoc insinto /usr/libexec/fsl doins -r tcl/* @@ -126,5 +128,5 @@ src_install() { #fi doenvd "${FILESDIR}"/99fsl - rm "${D}"/usr/bin/cluster + rm "${ED}"/usr/bin/cluster || die }
