commit: c337e46391e9fbbc1e639f860cd7b3eb72bdb536
Author: Sergey Popov <pinkbyte <AT> gentoo <DOT> org>
AuthorDate: Mon Oct 19 17:11:00 2015 +0000
Commit: Sergey Popov <pinkbyte <AT> gentoo <DOT> org>
CommitDate: Mon Oct 19 17:11:21 2015 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c337e463
sci-biology/seqan: correct dependency on sci-biology/samtools
Seqan 1.3.1 does not compile with samtools greater than 0.1.19
Also it does not compile with GCC 4.9 or higher, so restrict this too
Gentoo-Bug: 514250
Package-Manager: portage-2.2.20
sci-biology/seqan/seqan-1.3.1-r1.ebuild | 10 +++++++++-
1 file changed, 9 insertions(+), 1 deletion(-)
diff --git a/sci-biology/seqan/seqan-1.3.1-r1.ebuild
b/sci-biology/seqan/seqan-1.3.1-r1.ebuild
index a74eac3..2bcb7f6 100644
--- a/sci-biology/seqan/seqan-1.3.1-r1.ebuild
+++ b/sci-biology/seqan/seqan-1.3.1-r1.ebuild
@@ -20,11 +20,19 @@ IUSE=""
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
RDEPEND="${PYTHON_DEPS}
- sci-biology/samtools"
+ ~sci-biology/samtools-0.1.19"
DEPEND="${RDEPEND}"
S="${WORKDIR}"/${P}/cmake
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]]; then
+ [[ $(gcc-major-version) -gt 4 ]] || \
+ ( [[ $(gcc-major-version) -eq 4 && $(gcc-minor-version) -gt 8
]] ) \
+ && die "Sorry, but gcc 4.9 or higher is unsupported"
+ fi
+}
+
src_prepare() {
append-cppflags -I"${EPREFIX}/usr/include/bam"
rm -rf "${S}"/../lib/samtools || die
