commit: 0a1c8e7331d8f42b9a1d336668357906b0d49b4b Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Fri Nov 13 21:34:38 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Fri Nov 13 21:34:38 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0a1c8e73
sci-biology/Rcorrector: new package Package-Manager: portage-2.2.18 sci-biology/Rcorrector/ChangeLog | 9 ++++++++ sci-biology/Rcorrector/Rcorrector-9999.ebuild | 31 +++++++++++++++++++++++++++ sci-biology/Rcorrector/metadata.xml | 9 ++++++++ 3 files changed, 49 insertions(+) diff --git a/sci-biology/Rcorrector/ChangeLog b/sci-biology/Rcorrector/ChangeLog new file mode 100644 index 0000000..ebb9a0a --- /dev/null +++ b/sci-biology/Rcorrector/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/Rcorrector +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Id$ + +*Rcorrector-9999 (13 Nov 2015) + + 13 Nov 2015; Martin Mokrejs <[email protected]> + +Rcorrector-9999.ebuild, +metadata.xml: + sci-biology/Rcorrector: new package diff --git a/sci-biology/Rcorrector/Rcorrector-9999.ebuild b/sci-biology/Rcorrector/Rcorrector-9999.ebuild new file mode 100644 index 0000000..29e3e5e --- /dev/null +++ b/sci-biology/Rcorrector/Rcorrector-9999.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit git-r3 + +DESCRIPTION="Error correction for Illumina RNA-seq reads" +HOMEPAGE="https://github.com/mourisl/Rcorrector"; +SRC_URI="" +EGIT_REPO_URI="https://github.com/mourisl/Rcorrector.git"; + +LICENSE="GPL-2+" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="=sci-biology/jellyfish-2.1.3" +RDEPEND="${DEPEND} + dev-lang/perl" + +src_prepare(){ + # prevent building of jellyfish from bundled sources + mkdir -p jellyfish-2.1.3/bin + touch jellyfish-2.1.3/bin/jellyfish +} + +src_install(){ + dobin rcorrector run_rcorrector.pl +} diff --git a/sci-biology/Rcorrector/metadata.xml b/sci-biology/Rcorrector/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/Rcorrector/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
