commit: b6828a1b578163ed6a480edf37e14e5928fefbf3 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Thu Nov 19 22:26:25 2015 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Thu Nov 19 22:26:25 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b6828a1b
sci-biology/hmmer: version bump Package-Manager: portage-2.2.18 sci-biology/hmmer/ChangeLog | 9 +++++++ sci-biology/hmmer/hmmer-3.1_beta2.ebuild | 46 ++++++++++++++++++++++++++++++++ sci-biology/hmmer/metadata.xml | 9 +++++++ 3 files changed, 64 insertions(+) diff --git a/sci-biology/hmmer/ChangeLog b/sci-biology/hmmer/ChangeLog new file mode 100644 index 0000000..dcf8f5f --- /dev/null +++ b/sci-biology/hmmer/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/hmmer +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Id$ + +*hmmer-3.1_beta2 (19 Nov 2015) + + 19 Nov 2015; Martin Mokrejs <[email protected]> + +hmmer-3.1_beta2.ebuild, +metadata.xml: + sci-biology/hmmer: version bump diff --git a/sci-biology/hmmer/hmmer-3.1_beta2.ebuild b/sci-biology/hmmer/hmmer-3.1_beta2.ebuild new file mode 100644 index 0000000..2e266af --- /dev/null +++ b/sci-biology/hmmer/hmmer-3.1_beta2.ebuild @@ -0,0 +1,46 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils + +MY_PV="3.1b2" +DESCRIPTION="Sequence analysis using profile hidden Markov models" +HOMEPAGE="http://hmmer.janelia.org/"; +SRC_URI="ftp://selab.janelia.org/pub/software/hmmer3/"${MY_PV}"/"${PN}"-"${MY_PV}".tar.gz"; + +LICENSE="GPL-3" +SLOT="0" +IUSE="+cpu_flags_x86_sse mpi +threads gsl static-libs" +KEYWORDS="~amd64" + +DEPEND=" + mpi? ( virtual/mpi ) + gsl? ( >=sci-libs/gsl-1.12 )" +RDEPEND="${DEPEND}" + +src_prepare() { + epatch \ + "${FILESDIR}"/${P}-fix_tests.patch \ + "${FILESDIR}"/${P}-perl-5.16-2.patch +} + +src_configure() { + econf \ + $(use_enable cpu_flags_x86_sse sse) \ + $(use_enable mpi) \ + $(use_enable threads) \ + $(use_with gsl) +} + +src_install() { + default + + use static-libs && dolib.a src/libhmmer.a easel/libeasel.a + + insinto /usr/share/${PN} + doins -r tutorial + dodoc Userguide.pdf +} diff --git a/sci-biology/hmmer/metadata.xml b/sci-biology/hmmer/metadata.xml new file mode 100644 index 0000000..66fa766 --- /dev/null +++ b/sci-biology/hmmer/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <use> + <flag name="pvm">Add support for parallel virtual machine + (<pkg>sys-cluster/pvm</pkg>)</flag> + </use> +</pkgmetadata>
