commit: 34dc9de16f4718583c6703705017a2365a137bf8 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Thu Jan 21 18:35:27 2016 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Thu Jan 21 18:36:19 2016 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=34dc9de1
sci-biology/iedera: Remove hardcoded {C,CXX,LD}FLAGS from configure.ac Package-Manager: portage-2.2.27 .../iedera/files/iedera-1.05-fix-buildsystem.patch | 16 ++++++++++++++++ .../iedera/{iedera-1.05.ebuild => iedera-1.05-r1.ebuild} | 12 ++++++++---- 2 files changed, 24 insertions(+), 4 deletions(-) diff --git a/sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch b/sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch new file mode 100644 index 0000000..f232d7d --- /dev/null +++ b/sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch @@ -0,0 +1,16 @@ +iedera sets default flags that override user {C,CXX,LD}FLAGS + +--- iedera-1.05/configure.ac ++++ iedera-1.05/configure.ac +@@ -4,11 +4,5 @@ + AC_PROG_INSTALL + AC_PROG_CXX + AC_HEADER_STDC +-CFLAGS="$CFLAGS $UNAME_DEFS -O3 -pipe -funroll-loops -Wall" +-CXXFLAGS="$CFLAGS" +-LDFLAGS="$LDFLAGS -lm" +-AC_SUBST(CFLAGS) +-AC_SUBST(CXXFLAGS) +-AC_SUBST(LDFLAGS) + AC_CONFIG_FILES([Makefile]) + AC_OUTPUT diff --git a/sci-biology/iedera/iedera-1.05.ebuild b/sci-biology/iedera/iedera-1.05-r1.ebuild similarity index 73% rename from sci-biology/iedera/iedera-1.05.ebuild rename to sci-biology/iedera/iedera-1.05-r1.ebuild index fb442a6..ec52dd3 100644 --- a/sci-biology/iedera/iedera-1.05.ebuild +++ b/sci-biology/iedera/iedera-1.05-r1.ebuild @@ -4,6 +4,8 @@ EAPI=6 +inherit autotools + DESCRIPTION="A subset seed design tool for DNA sequence alignment" HOMEPAGE="http://bioinfo.lifl.fr/yass/iedera.php" SRC_URI="http://bioinfo.lifl.fr/yass/files/${P}.tar.gz" @@ -13,10 +15,12 @@ SLOT="0" IUSE="" KEYWORDS="~amd64 ~x86" -DEPEND="" -RDEPEND="" +PATCHES=( + "${FILESDIR}/${P}-fix-buildsystem.patch" +) -src_install() { +src_prepare() { + mv configure.{in,ac} || die default - dodoc AUTHORS README NEWS + eautoreconf }