jlec 14/05/07 11:00:43 Modified: ChangeLog Added: biopython-1.63-r1.ebuild Log: sci-biology/biopython: Import changes from sci overlay (Portage version: 2.2.10/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.75 sci-biology/biopython/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.75&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?rev=1.75&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/ChangeLog?r1=1.74&r2=1.75 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v retrieving revision 1.74 retrieving revision 1.75 diff -u -r1.74 -r1.75 --- ChangeLog 30 Jan 2014 15:15:24 -0000 1.74 +++ ChangeLog 7 May 2014 11:00:43 -0000 1.75 @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/biopython # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.74 2014/01/30 15:15:24 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.75 2014/05/07 11:00:43 jlec Exp $ + +*biopython-1.63-r1 (07 May 2014) + + 07 May 2014; Justin Lecher <[email protected]> +biopython-1.63-r1.ebuild, + +files/SffIO_broken_padding.patch, +files/SffIO_error_in_check_eof.patch: + Import changes from sci overlay *biopython-1.63 (30 Jan 2014) 1.1 sci-biology/biopython/biopython-1.63-r1.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.63-r1.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/biopython/biopython-1.63-r1.ebuild?rev=1.1&content-type=text/plain Index: biopython-1.63-r1.ebuild =================================================================== # Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.63-r1.ebuild,v 1.1 2014/05/07 11:00:43 jlec Exp $ EAPI=5 PYTHON_COMPAT=( python{2_6,2_7} ) inherit distutils-r1 eutils DESCRIPTION="Python modules for computational molecular biology" HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/"; SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"; LICENSE="HPND" SLOT="0" KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" IUSE="mysql postgres" REQUIRED_USE="${PYTHON_REQUIRED_USE}" RDEPEND="${PYTHON_DEPS} dev-python/matplotlib[${PYTHON_USEDEP}] dev-python/networkx[${PYTHON_USEDEP}] dev-python/numpy[${PYTHON_USEDEP}] dev-python/rdflib[${PYTHON_USEDEP}] dev-python/pygraphviz[${PYTHON_USEDEP}] dev-python/reportlab[${PYTHON_USEDEP}] media-gfx/pydot[${PYTHON_USEDEP}] mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] ) postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )" DEPEND="${RDEPEND} sys-devel/flex" DOCS=( CONTRIB DEPRECATED NEWS README Doc/. ) PATCHES=( "${FILESDIR}/SffIO_error_in_check_eof.patch" "${FILESDIR}/SffIO_broken_padding.patch" ) python_test() { cd Tests || die ${PYTHON} run_tests.py || die } python_install_all() { distutils-r1_python_install_all dodir /usr/share/${PN} cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die }
