commit: 2a8becfc2faa9ad23f8b0ee191fd7a2889156335 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Feb 16 18:03:35 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Feb 16 18:03:35 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=2a8becfc
sci-biology/cross_genome: new a package somewhat belonging to the phusion2 software bundle Package-Manager: portage-2.2.26 .../cross_genome/cross_genome-20140822.ebuild | 29 ++++++++++++++++++++++ sci-biology/cross_genome/metadata.xml | 12 +++++++++ 2 files changed, 41 insertions(+) diff --git a/sci-biology/cross_genome/cross_genome-20140822.ebuild b/sci-biology/cross_genome/cross_genome-20140822.ebuild new file mode 100644 index 0000000..d85fec8 --- /dev/null +++ b/sci-biology/cross_genome/cross_genome-20140822.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Genome scaffolding using cross-species synteny" +HOMEPAGE="http://www.sanger.ac.uk/science/tools/crossgenome"; +SRC_URI="https://sourceforge.net/projects/phusion2/files/cross_genome/cross_genome.tar.gz -> cross_genome-20140822.tar.gz" + +LICENSE="GPL-3+" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}" + +src_prepare(){ + sed -e 's/^CC =/# CC =/' -i Makefile || die + sed -e 's/^CFLAGS =/# CFLAGS =/' -i Makefile || die +} + +src_install(){ + dobin cross_genome.csh cross_genome + dodoc README +} diff --git a/sci-biology/cross_genome/metadata.xml b/sci-biology/cross_genome/metadata.xml new file mode 100644 index 0000000..1699e58 --- /dev/null +++ b/sci-biology/cross_genome/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +<maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
