commit: 44918a4a9d9844c8d805694864e978e2c5306eec
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Feb 27 20:38:11 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Feb 27 20:38:11 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=44918a4a
sci-biology/BRAKER: version bump; update to a new LICENSE; update HOMEPAGE and
SRC_URI
Package-Manager: portage-2.2.26
.../BRAKER/{BRAKER-20150330.ebuild => BRAKER-1.8.ebuild} | 16 +++++++++++-----
1 file changed, 11 insertions(+), 5 deletions(-)
diff --git a/sci-biology/BRAKER/BRAKER-20150330.ebuild
b/sci-biology/BRAKER/BRAKER-1.8.ebuild
similarity index 55%
rename from sci-biology/BRAKER/BRAKER-20150330.ebuild
rename to sci-biology/BRAKER/BRAKER-1.8.ebuild
index a6ae578..ca09108 100644
--- a/sci-biology/BRAKER/BRAKER-20150330.ebuild
+++ b/sci-biology/BRAKER/BRAKER-1.8.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -9,17 +9,23 @@ inherit perl-module
DESCRIPTION="Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS"
# http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf
-HOMEPAGE="http://bioinf.uni-greifswald.de/augustus/downloads";
-SRC_URI=" http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1.tar.gz ->
${P}.tar.gz"
+HOMEPAGE="http://bioinf.uni-greifswald.de/bioinf/braker
+ http://bioinf.uni-greifswald.de/augustus/downloads";
+SRC_URI="
http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1_v"${PV}".tar.gz ->
${P}.tar.gz"
+# Download BRAKER1 from
http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1.tar.gz.
+# The most recent release is version 1.8, from December 15th 2015.
+# Example data for testing the BRAKER1 pipeline is available at
+# http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1examples.tar.gz
(1.1 GB).
-LICENSE="Artistic"
+LICENSE="GPL-3"
SLOT="0"
KEYWORDS=""
IUSE=""
DEPEND=""
RDEPEND="${DEPEND}
- virtual/perl-Scalar-List-Utils"
+ virtual/perl-Scalar-List-Utils
+ sci-biology/augustus"
#
# BUG:
# this causes:
