commit: deaa21ff2b928318d0e1b8fe45aa404411f08086
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 27 23:52:51 2016 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Mar 27 23:52:51 2016 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=deaa21ff
sci-biology/samtools: Move to SLOT="0.1-legacy" for future legacy versions
Package-Manager: portage-2.2.28
.../samtools/files/samtools-0.1.20-buildsystem.patch | 20 ++++++++++----------
...tools-0.1.20.ebuild => samtools-0.1.20-r1.ebuild} | 2 +-
2 files changed, 11 insertions(+), 11 deletions(-)
diff --git a/sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch
b/sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch
index dfdd890..eb9f693 100644
--- a/sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch
+++ b/sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch
@@ -75,15 +75,15 @@
.PHONY:all-recur lib-recur clean-recur cleanlocal-recur install-recur
-lib:libbam.a
-+lib:libbam-legacy.a
++lib:libbam-0.1-legacy.a
-libbam.a:$(LOBJS)
-+libbam-legacy.a:$(LOBJS)
++libbam-0.1-legacy.a:$(LOBJS)
$(AR) -csru $@ $(LOBJS)
samtools:lib-recur $(AOBJS)
- $(CC) $(CFLAGS) -o $@ $(AOBJS) $(LDFLAGS) libbam.a -Lbcftools
-lbcf $(LIBPATH) $(LIBCURSES) -lm -lz -lpthread
-+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(AOBJS) libbam-legacy.a
-Lbcftools -lbcf $(LIBPATH) $(LIBCURSES) -lm -lz -lpthread
++ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(AOBJS) -L. -lbam-0.1-legacy
-Lbcftools -lbcf $(LIBPATH) $(LIBCURSES) -lm -lz -lpthread
razip:razip.o razf.o $(KNETFILE_O)
- $(CC) $(CFLAGS) -o $@ $^ -lz
@@ -105,21 +105,21 @@
-libbam.1.dylib-local:$(LOBJS)
- libtool -dynamic $(LOBJS) -o libbam.1.dylib -lc -lz
-+libbam-legacy.1.dylib-local:$(LOBJS)
-+ libtool -dynamic $(LOBJS) -o libbam-legacy.1.dylib -lc -lz
++libbam-0.1-legacy.1.dylib-local:$(LOBJS)
++ libtool -dynamic $(LOBJS) -o libbam-0.1-legacy.1.dylib -lc -lz
-libbam.so.1-local:$(LOBJS)
- $(CC) -shared -Wl,-soname,libbam.so -o libbam.so.1 $(LOBJS) -lc
-lz
-+libbam-legacy.so.1-local:$(LOBJS)
-+ $(CC) $(LDFLAGS) -shared -Wl,-soname,libbam-legacy.so -o
libbam-legacy.so.1 $(LOBJS) -lc -lz -lm -lpthread
++libbam-0.1-legacy.so.1-local:$(LOBJS)
++ $(CC) $(LDFLAGS) -shared -Wl,-soname,libbam-0.1-legacy.so -o
libbam-0.1-legacy.so.1 $(LOBJS) -lc -lz -lm -lpthread
dylib:
@$(MAKE) cleanlocal; \
case `uname` in \
- Linux) $(MAKE) CFLAGS="$(CFLAGS) -fPIC"
libbam.so.1-local;; \
- Darwin) $(MAKE) CFLAGS="$(CFLAGS) -fPIC"
libbam.1.dylib-local;; \
-+ Linux) $(MAKE) CFLAGS="$(CFLAGS) -fPIC"
libbam-legacy.so.1-local;; \
-+ Darwin) $(MAKE) CFLAGS="$(CFLAGS) -fPIC"
libbam-legacy.1.dylib-local;; \
++ Linux) $(MAKE) CFLAGS="$(CFLAGS) -fPIC"
libbam-0.1-legacy.so.1-local;; \
++ Darwin) $(MAKE) CFLAGS="$(CFLAGS) -fPIC"
libbam-0.1-legacy.1.dylib-local;; \
*) echo 'Unknown OS';; \
esac
@@ -162,7 +162,7 @@
bamcheck:bamcheck.o
- $(CC) $(CFLAGS) -o $@ bamcheck.o -L.. -lm -lbam -lpthread -lz
-+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ bamcheck.o -L.. -lm
-lbam-legacy -lpthread -lz
++ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ bamcheck.o -L.. -lm
-lbam-0.1-legacy -lpthread -lz
bamcheck.o:bamcheck.c ../faidx.h ../khash.h ../sam.h ../razf.h
$(CC) $(CFLAGS) -c -I.. -o $@ bamcheck.c
diff --git a/sci-biology/samtools/samtools-0.1.20.ebuild
b/sci-biology/samtools/samtools-0.1.20-r1.ebuild
similarity index 99%
rename from sci-biology/samtools/samtools-0.1.20.ebuild
rename to sci-biology/samtools/samtools-0.1.20-r1.ebuild
index 3ee9956..744d15f 100644
--- a/sci-biology/samtools/samtools-0.1.20.ebuild
+++ b/sci-biology/samtools/samtools-0.1.20-r1.ebuild
@@ -13,7 +13,7 @@ HOMEPAGE="http://samtools.sourceforge.net/";
SRC_URI="https://github.com/samtools/samtools/archive/${PV}.tar.gz ->
${P}.tar.gz"
LICENSE="MIT"
-SLOT="legacy"
+SLOT="0.1-legacy"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
IUSE="examples"
