commit: 3106f99effce070e746c05216c333e15e241c79f Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun Apr 10 13:19:23 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Apr 10 13:19:23 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3106f99e
sci-biology/Scaffolder-evaluation: new package Package-Manager: portage-2.2.28 .../Scaffolder-evaluation-9999.ebuild | 34 ++++++++++++++++++++++ sci-biology/Scaffolder-evaluation/metadata.xml | 12 ++++++++ 2 files changed, 46 insertions(+) diff --git a/sci-biology/Scaffolder-evaluation/Scaffolder-evaluation-9999.ebuild b/sci-biology/Scaffolder-evaluation/Scaffolder-evaluation-9999.ebuild new file mode 100644 index 0000000..746863a --- /dev/null +++ b/sci-biology/Scaffolder-evaluation/Scaffolder-evaluation-9999.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit git-r3 + +DESCRIPTION="Scripts to run genome assembly scaffolding tools and analyse output for accuracy" +HOMEPAGE="https://github.com/martinghunt/Scaffolder-evaluation + http://genomebiology.com/2014/15/3/R42"; +EGIT_REPO_URI="https://github.com/martinghunt/Scaffolder-evaluation.git"; + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + dev-lang/perl + dev-lang/python + dev-lang/R + media-gfx/graphviz + sci-biology/mummer + sci-biology/bowtie + sci-biology/samtools + sci-biology/ncbi-tools + sci-biology/Fastaq" + +src_install(){ + dobin Analysis-scripts/* Wrapper-scripts/* + dodoc README.md +} diff --git a/sci-biology/Scaffolder-evaluation/metadata.xml b/sci-biology/Scaffolder-evaluation/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/Scaffolder-evaluation/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
