commit: e13abc54d0a4bb65bdb67109fbe1ee61f401cf88 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun Apr 10 21:21:00 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Apr 10 21:21:00 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e13abc54
sci-biology/megahit: new package Package-Manager: portage-2.2.28 sci-biology/megahit/megahit-9999.ebuild | 34 +++++++++++++++++++++++++++++++++ sci-biology/megahit/metadata.xml | 12 ++++++++++++ 2 files changed, 46 insertions(+) diff --git a/sci-biology/megahit/megahit-9999.ebuild b/sci-biology/megahit/megahit-9999.ebuild new file mode 100644 index 0000000..def7fd6 --- /dev/null +++ b/sci-biology/megahit/megahit-9999.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit git-r3 toolchain-funcs + +DESCRIPTION="Metagenome assembler using succinct de Bruijn graph approach with CUDA" +HOMEPAGE="https://github.com/voutcn/megahit + http://bioinformatics.oxfordjournals.org/content/31/10/1674.abstract"; +EGIT_REPO_URI="https://github.com/voutcn/megahit.git"; + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="" +IUSE="+openmp" + +DEPEND="" +RDEPEND="${DEPEND} + sys-libs/zlib" +# >=gcc-4.4 + +# use make use_gpu=1 to compile it and turn on --use-gpu to activate GPU acceleration when running megahit + +src_prepare(){ + default + sed -e "s#^CXXFLAGS = -g -O2#CXXFLAGS = ${CFLAGS}#" -i Makefile || die +} + +src_install(){ + dobin megahit megahit_toolkit megahit_sdbg_build megahit_asm_core + dodoc README.md +} diff --git a/sci-biology/megahit/metadata.xml b/sci-biology/megahit/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/megahit/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>mmokr...@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biol...@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
