commit: bd2bae0edf7dc6a4b0869e96a1652541f3e4f60c Author: Sébastien Fabbro <bicatali <AT> gentoo <DOT> org> AuthorDate: Tue Jun 7 22:00:06 2016 +0000 Commit: Sebastien Fabbro <bicatali <AT> gentoo <DOT> org> CommitDate: Tue Jun 7 22:02:15 2016 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bd2bae0e
dev-python/montage-wrapper: Initial import Package-Manager: portage-2.3.0_rc1 dev-python/montage-wrapper/Manifest | 1 + .../files/montage-wrapper-0.9.8-fix_tests.patch | 40 +++++++++++++++++ .../montage-wrapper-0.9.8-increase_rtol.patch | 17 ++++++++ .../montage-wrapper-0.9.8-use_configparser.patch | 18 ++++++++ dev-python/montage-wrapper/metadata.xml | 17 ++++++++ .../montage-wrapper/montage-wrapper-0.9.8.ebuild | 51 ++++++++++++++++++++++ 6 files changed, 144 insertions(+) diff --git a/dev-python/montage-wrapper/Manifest b/dev-python/montage-wrapper/Manifest new file mode 100644 index 0000000..92a8c29 --- /dev/null +++ b/dev-python/montage-wrapper/Manifest @@ -0,0 +1 @@ +DIST montage-wrapper-0.9.8.tar.gz 208240 SHA256 8f7c468f602e3fa38907e481abaede08fbc4cd17faae0b82d86638c0418aa98e SHA512 a9aeb48f86d055448fdfed3a5c3762b554627db10f1374cbd3f7af6002721ae04e9f47828c2084147be40f79c1c4ce6e56568bf61a6cdd78a31ce91de6365ec1 WHIRLPOOL f224a4fe9dba626700e85a78b309f5db0bf1bac26d27457f6f3eb8a53ae58effbe70043c8c1f311029e36e36082540a9da634821df75366056e9ecb7dbc602f1 diff --git a/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-fix_tests.patch b/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-fix_tests.patch new file mode 100644 index 0000000..8d611b7 --- /dev/null +++ b/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-fix_tests.patch @@ -0,0 +1,40 @@ +Author: Ole Streicher <[email protected]> +Description: Make sure that opened FITS files are closed after the test +--- a/montage_wrapper/tests/test_wrappers.py ++++ b/montage_wrapper/tests/test_wrappers.py +@@ -46,21 +46,21 @@ + + def test_mosaic(self): + mosaic(os.path.join(self.tmpdir, 'raw'),os.path.join(self.tmpdir, 'mosaic'), hdu=0) +- hdu = fits.open(os.path.join(self.tmpdir, 'mosaic', 'mosaic.fits'))[0] +- assert hdu.data.shape == (288, 282) +- valid = hdu.data[~np.isnan(hdu.data)] +- assert len(valid) == 65029 +- assert_allclose(np.std(valid), 0.12658458001333581, 1e-5) +- assert_allclose(np.mean(valid), 0.4995945318627074, 1e-5) +- assert_allclose(np.median(valid), 0.5003376603126526, 1e-5) ++ with fits.open(os.path.join(self.tmpdir, 'mosaic', 'mosaic.fits')) as hdu: ++ assert hdu[0].data.shape == (288, 282) ++ valid = hdu[0].data[~np.isnan(hdu[0].data)] ++ assert len(valid) == 65029 ++ assert_allclose(np.std(valid), 0.12658458001333581, 1e-5) ++ assert_allclose(np.mean(valid), 0.4995945318627074, 1e-5) ++ assert_allclose(np.median(valid), 0.5003376603126526, 1e-5) + + @pytest.mark.xfail() # results are not consistent on different machines + def test_mosaic_background_match(self): + mosaic(os.path.join(self.tmpdir, 'raw'),os.path.join(self.tmpdir, 'mosaic_bkgmatch'), background_match=True) +- hdu = fits.open(os.path.join(self.tmpdir, 'mosaic_bkgmatch', 'mosaic.fits'))[0] +- assert hdu.data.shape == (288, 282) +- valid = hdu.data[~np.isnan(hdu.data)] +- assert len(valid) == 65029 +- assert_allclose(np.std(valid), 0.12661606622654725) +- assert_allclose(np.mean(valid), 0.4994805202294361) +- assert_allclose(np.median(valid), 0.5002447366714478) ++ with fits.open(os.path.join(self.tmpdir, 'mosaic_bkgmatch', 'mosaic.fits')) as hdu: ++ assert hdu[0].data.shape == (288, 282) ++ valid = hdu[0].data[~np.isnan(hdu[0].data)] ++ assert len(valid) == 65029 ++ assert_allclose(np.std(valid), 0.12661606622654725) ++ assert_allclose(np.mean(valid), 0.4994805202294361) ++ assert_allclose(np.median(valid), 0.5002447366714478) diff --git a/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-increase_rtol.patch b/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-increase_rtol.patch new file mode 100644 index 0000000..285b525 --- /dev/null +++ b/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-increase_rtol.patch @@ -0,0 +1,17 @@ +Author: Ole Streicher <[email protected]> +Description: Increase rtol of asserts to let the tests succeed with montage-4.0 +--- a/montage_wrapper/tests/test_wrappers.py ++++ b/montage_wrapper/tests/test_wrappers.py +@@ -50,9 +50,9 @@ + assert hdu.data.shape == (288, 282) + valid = hdu.data[~np.isnan(hdu.data)] + assert len(valid) == 65029 +- assert_allclose(np.std(valid), 0.12658458001333581) +- assert_allclose(np.mean(valid), 0.4995945318627074) +- assert_allclose(np.median(valid), 0.5003376603126526) ++ assert_allclose(np.std(valid), 0.12658458001333581, 1e-5) ++ assert_allclose(np.mean(valid), 0.4995945318627074, 1e-5) ++ assert_allclose(np.median(valid), 0.5003376603126526, 1e-5) + + @pytest.mark.xfail() # results are not consistent on different machines + def test_mosaic_background_match(self): diff --git a/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-use_configparser.patch b/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-use_configparser.patch new file mode 100644 index 0000000..082c367 --- /dev/null +++ b/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-use_configparser.patch @@ -0,0 +1,18 @@ +Author: Vincent Prat <[email protected]> +Description: Use ConfigParser module instead of the one embedded in distutils.config +--- a/setup.py ++++ b/setup.py +@@ -21,8 +21,11 @@ + from astropy_helpers.version_helpers import generate_version_py + + # Get some values from the setup.cfg +-from distutils import config +-conf = config.ConfigParser() ++try: ++ from configparser import ConfigParser ++except: ++ from ConfigParser import ConfigParser ++conf = ConfigParser() + conf.read(['setup.cfg']) + metadata = dict(conf.items('metadata')) + diff --git a/dev-python/montage-wrapper/metadata.xml b/dev-python/montage-wrapper/metadata.xml new file mode 100644 index 0000000..aa3e481 --- /dev/null +++ b/dev-python/montage-wrapper/metadata.xml @@ -0,0 +1,17 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Astronomy Project</name> + </maintainer> + <longdescription> + This Astropy-affiliated package provides a python wrapper to the + Montage Astronomical Image Mosaic Engine, including both functions to + access individual Montage commands, and high-level functions to + facilitate mosaicking and re-projecting. +</longdescription> + <upstream> + <remote-id type="pypi">montage-wrapper</remote-id> + </upstream> +</pkgmetadata> diff --git a/dev-python/montage-wrapper/montage-wrapper-0.9.8.ebuild b/dev-python/montage-wrapper/montage-wrapper-0.9.8.ebuild new file mode 100644 index 0000000..a9d8750 --- /dev/null +++ b/dev-python/montage-wrapper/montage-wrapper-0.9.8.ebuild @@ -0,0 +1,51 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) + +inherit distutils-r1 + +DESCRIPTION="Python wrapper for the Montage mosaicking toolkit" +HOMEPAGE="http://www.astropy.org/montage-wrapper/"; +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc test" + +RDEPEND=" + dev-python/astropy[${PYTHON_USEDEP}] + sci-astronomy/montage" +DEPEND=" + dev-python/astropy[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + test? ( sci-astronomy/montage )" + +PATCHES=( + "${FILESDIR}/${P}-increase_rtol.patch" + "${FILESDIR}/${P}-fix_tests.patch" + "${FILESDIR}/${P}-use_configparser.patch" +) + +python_prepare_all() { + # use system astropy-helpers instead of bundled one + sed -i -e '/auto_use/s/True/False/' setup.cfg || die + distutils-r1_python_prepare_all +} + +python_compile_all() { + use doc && PYTHONPATH=".." emake -C docs html +} + +python_test() { + ${EPYTHON} setup.py test +} + +python_install_all() { + use doc && HTML_DOCS=( docs/_build/html/. ) + distutils-r1_python_install_all +}
