commit: 50c01592d588fb2dadc5e4ca17aefc2943cb9f96 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Thu Jun 30 18:06:03 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Thu Jun 30 18:06:03 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=50c01592
sci-biology/Atlas: fix Makefiles at least, will need to unbundle some gzstream library too Package-Manager: portage-2.2.28 sci-biology/Atlas/Atlas-2005.ebuild | 14 ++++++++++---- 1 file changed, 10 insertions(+), 4 deletions(-) diff --git a/sci-biology/Atlas/Atlas-2005.ebuild b/sci-biology/Atlas/Atlas-2005.ebuild index c95df06..4806d1c 100644 --- a/sci-biology/Atlas/Atlas-2005.ebuild +++ b/sci-biology/Atlas/Atlas-2005.ebuild @@ -4,6 +4,8 @@ EAPI=5 +inherit toolchain-funcs + DESCRIPTION="Atlas Whole Genome Assembly Suite" HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-whole-genome-assembly-suite"; SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas-src.tgz"; @@ -17,12 +19,16 @@ IUSE="" DEPEND="dev-libs/boost" RDEPEND="${DEPEND}" -S="${WORKDIR}"/atlas-src +S="${WORKDIR}"/atlas-src/CBT + +src_prepare(){ + sed -e "s/^CC =/CC = $(tc-getCC)/" -e "s/^GCC =/GCC = $(tc-getCXX)/" -i Makefile || die + sed -e "s/^GCC =/GCC = $(tc-getCXX)/" -i ../CBTApps/Makefile.in || die +} src_compile(){ # install headers, bins and libs into CBT_DEVEL_USER, then compile apps - cd src || die - emake CBT_DEVEL_DIR="${S}"/CBT CBT_INSTALL_DIR="${D}" + emake CBT_DEVEL_DIR="${S}" CBT_INSTALL_DIR="${D}" cd ../CBTApps || die - emake CBT_DEVEL_DIR="${S}"/CBT CBT_INSTALL_DIR="${D}" + emake CBT_DEVEL_DIR="${S}" CBT_INSTALL_DIR="${D}" }
