commit: 6b020466331bf69a623d04b7f30b7a6b3f78fd50 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Jul 12 14:51:39 2016 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Jul 12 14:51:39 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=6b020466
sci-biology/wgs_tools: add taxonomy-related info to NCBI SRA and BLAST+ Package-Manager: portage-2.2.28 sci-biology/wgs_tools/metadata.xml | 12 ++++++++++ sci-biology/wgs_tools/wgs_tools-9999.ebuild | 36 +++++++++++++++++++++++++++++ 2 files changed, 48 insertions(+) diff --git a/sci-biology/wgs_tools/metadata.xml b/sci-biology/wgs_tools/metadata.xml new file mode 100644 index 0000000..f68a1b6 --- /dev/null +++ b/sci-biology/wgs_tools/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/wgs_tools/wgs_tools-9999.ebuild b/sci-biology/wgs_tools/wgs_tools-9999.ebuild new file mode 100644 index 0000000..d3c7656 --- /dev/null +++ b/sci-biology/wgs_tools/wgs_tools-9999.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +DESCRIPTION="Scripts for ncbi-tools++ and SRA postprocessing using taxonomy" +HOMEPAGE="ftp://ftp.ncbi.nih.gov/blast/WGS_TOOLS + http://www.ncbi.nlm.nih.gov/books/NBK279690/ + http://www.ncbi.nlm.nih.gov/genbank/wgs"; +SRC_URI="ftp://ftp.ncbi.nih.gov/blast/WGS_TOOLS/taxid2tsa.pl + ftp://ftp.ncbi.nih.gov/blast/WGS_TOOLS/taxid2wgs.pl"; + +LICENSE="all-rights-reserved" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + dev-lang/perl" + +src_install(){ + dobin *.pl + dodoc README* +} + +pkg_postinst(){ + einfo "These scripts are helpful for VDB-enabled blast+ applications" + einfo "and for tools from SRA toolkit sci-biology/sra_sdk or" + einfo "sci-biology/sra_toolkit-bin. They are not added to DEPENDENCIES" + einfo "yet until the packages are stable. Probably you want to download" + einfo "Please read http://www.ncbi.nlm.nih.gov/books/NBK158899/"; + einfo "and unpack one of the prebuilt binaries from:" + einfo "https://github.com/ncbi/sra-tools/wiki/Downloads"; +}
