commit: cec254823f198e90b0c51750704aab40e9e0c64c Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Sun Sep 25 09:44:52 2016 +0000 Commit: Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de> CommitDate: Sun Sep 25 09:44:52 2016 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=cec25482
sci-biology/vcftools: remove, in main tree sci-biology/vcftools/metadata.xml | 11 ------ sci-biology/vcftools/vcftools-0.1.14.ebuild | 55 ----------------------------- 2 files changed, 66 deletions(-) diff --git a/sci-biology/vcftools/metadata.xml b/sci-biology/vcftools/metadata.xml deleted file mode 100644 index 77f6f92..0000000 --- a/sci-biology/vcftools/metadata.xml +++ /dev/null @@ -1,11 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="project"> - <email>sci-biol...@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">vcftools</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-biology/vcftools/vcftools-0.1.14.ebuild b/sci-biology/vcftools/vcftools-0.1.14.ebuild deleted file mode 100644 index 0e792f8..0000000 --- a/sci-biology/vcftools/vcftools-0.1.14.ebuild +++ /dev/null @@ -1,55 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -PERL_EXPORT_PHASE_FUNCTIONS=no -inherit perl-module eutils toolchain-funcs autotools - -MY_P="${PN}_${PV}" - -DESCRIPTION="Tools for working with VCF (Variant Call Format) files" -HOMEPAGE="https://vcftools.github.io - http://vcftools.sourceforge.net"; -SRC_URI="https://github.com/vcftools/vcftools/archive/vcftools-vcftools-v0.1.14-14-g2543f81.tar.gz"; -#SRC_URI="https://codeload.github.com/vcftools/vcftools/legacy.tar.gz/master -> ${P}.tar.gz" -#SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.gz" - -LICENSE="LGPL-3" -SLOT="0" -KEYWORDS="~x86 ~amd64" -IUSE="lapack" - -RDEPEND="lapack? ( virtual/lapack )" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -S="${WORKDIR}"/vcftools-vcftools-2543f81 -#S="${WORKDIR}/${MY_P}" - -src_prepare() { - # epatch "${FILESDIR}"/${P}-buildsystem.patch - tc-export CXX PKG_CONFIG - eautoreconf -} - -src_configure(){ - econf --enable-pca # --with-pmdir=DIR install Perl modules in DIR -} - -#src_compile() { -# local myconf -# use lapack && myconf="VCFTOOLS_PCA=1" -# emake -C cpp ${myconf} -#} - -src_install(){ - perl_set_version - dobin src/cpp/"${PN}" - doman src/cpp/"${PN}".1 - insinto "${VENDOR_LIB}" - doins src/perl/*.pm - dobin src/perl/{fill,vcf}-* - dodoc README.md -}
