commit: 02cb4dded41609783964b8a0f6d01dde60455535
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Oct 17 15:21:39 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Oct 17 15:21:39 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=02cb4dde
sci-biology/kat: new package
Boost library is not found during linking step
Package needs >=python-3.1 as the default python interpreter (for what?)
The bundled jellyfish code seems to result in a renamed library and *.pc
file so probably it will not clash with system-wide jellyfish
Package-Manager: portage-2.3.0
sci-biology/kat/kat-2.1.1.ebuild | 29 +++++++++++++++++++++++++++++
sci-biology/kat/kat-9999.ebuild | 29 +++++++++++++++++++++++++++++
sci-biology/kat/metadata.xml | 12 ++++++++++++
3 files changed, 70 insertions(+)
diff --git a/sci-biology/kat/kat-2.1.1.ebuild b/sci-biology/kat/kat-2.1.1.ebuild
new file mode 100644
index 0000000..3a184c9
--- /dev/null
+++ b/sci-biology/kat/kat-2.1.1.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+PYTHON_COMPAT=( python{3_4,3_5} ) # requires python >= 3.1
+
+DESCRIPTION="K-mer Analysis Toolkit (histogram, filter, compare sets, plot)"
+HOMEPAGE="https://github.com/TGAC/KAT";
+SRC_URI="https://github.com/TGAC/KAT/archive/Release-${PV}.tar.gz ->
${P}.tar.gz"
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="dev-libs/boost:0
+ dev-python/matplotlib
+ sci-visualization/gnuplot"
+RDEPEND="${DEPEND}"
+# contains bundled modified version of jellyfish-2.2.
+
+S="${WORKDIR}"/KAT-Release-"${PV}"
+
+src_prepare(){
+ sh ./autogen.sh . || die
+ default
+}
diff --git a/sci-biology/kat/kat-9999.ebuild b/sci-biology/kat/kat-9999.ebuild
new file mode 100644
index 0000000..e8735e4
--- /dev/null
+++ b/sci-biology/kat/kat-9999.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+PYTHON_COMPAT=( python{3_4,3_5} ) # requires python >= 3.1
+
+inherit git-r3
+
+DESCRIPTION="K-mer Analysis Toolkit (histogram, filter, compare sets, plot)"
+HOMEPAGE="https://github.com/TGAC/KAT";
+EGIT_REPO_URI="https://github.com/TGAC/KAT.git";
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="dev-libs/boost:0
+ dev-python/matplotlib
+ sci-visualization/gnuplot"
+RDEPEND="${DEPEND}"
+# contains bundled a modified version of jellyfish-2.2.0
+
+src_prepare(){
+ sh ./autogen.sh . || die
+ default
+}
diff --git a/sci-biology/kat/metadata.xml b/sci-biology/kat/metadata.xml
new file mode 100644
index 0000000..f68a1b6
--- /dev/null
+++ b/sci-biology/kat/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
+<pkgmetadata>
+ <maintainer type="person">
+ <email>[email protected]</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>[email protected]</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+</pkgmetadata>
