commit: 28e8a88f0ac87bef716fbdb68dcdd52439980236
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Nov 8 19:25:26 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Nov 8 19:25:26 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=28e8a88f
sci-biology/igv: fix DEPS so that ebuild+repoman are happy (but emerge
complains)
Package-Manager: portage-2.3.0
sci-biology/igv/igv-2.3.81.ebuild | 18 +++++++++---------
.../igv/{igv-2.3.81.ebuild => igv-2.3.88.ebuild} | 18 +++++++++---------
2 files changed, 18 insertions(+), 18 deletions(-)
diff --git a/sci-biology/igv/igv-2.3.81.ebuild
b/sci-biology/igv/igv-2.3.81.ebuild
index 99407f6..b7c3b3d 100644
--- a/sci-biology/igv/igv-2.3.81.ebuild
+++ b/sci-biology/igv/igv-2.3.81.ebuild
@@ -32,22 +32,22 @@ KEYWORDS="" #
igv-2.3.81/src/com/iontorrent/views/FlowSignalDistributionPanel.ja
# actually more exactly the COMMON_DEPS should contain:
# >=dev-java/commons-compress-1.11 # use bundled library until
dev-java/commons-compress is bumped, see bug #591696
COMMON_DEPS="
- dev-java/absolutelayout
+ dev-java/absolutelayout:0
dev-java/jama:0
dev-java/commons-compress
dev-java/commons-logging:0
>=dev-java/commons-io-2.1:1
- dev-java/commons-math:2
- dev-java/commons-jexl:2
- dev-java/jcommon:1.0
- dev-java/jfreechart:1.0
+ dev-java/commons-math:*
+ dev-java/commons-jexl:*
+ dev-java/jcommon:*
+ dev-java/jfreechart:*
dev-java/jlfgr:0
dev-java/log4j:0
- dev-java/gson:2.2.2
- dev-java/guava:*
- dev-java/swing-layout:1
+ dev-java/gson:*
+ >=dev-java/guava-17:*
+ dev-java/swing-layout:*
dev-java/jgrapht:0
- dev-java/junit:4"
+ dev-java/junit:0"
DEPEND=">=virtual/jdk-1.7
app-arch/unzip
diff --git a/sci-biology/igv/igv-2.3.81.ebuild
b/sci-biology/igv/igv-2.3.88.ebuild
similarity index 88%
copy from sci-biology/igv/igv-2.3.81.ebuild
copy to sci-biology/igv/igv-2.3.88.ebuild
index 99407f6..2a03eac 100644
--- a/sci-biology/igv/igv-2.3.81.ebuild
+++ b/sci-biology/igv/igv-2.3.88.ebuild
@@ -27,27 +27,27 @@ HOMEPAGE="http://www.broadinstitute.org/igv/";
LICENSE="LGPL-2.1"
SLOT="0"
IUSE=""
-KEYWORDS="" #
igv-2.3.81/src/com/iontorrent/views/FlowSignalDistributionPanel.java:222:
error: cannot access PublicCloneable
+KEYWORDS="" # see upstream issue #332
# actually more exactly the COMMON_DEPS should contain:
# >=dev-java/commons-compress-1.11 # use bundled library until
dev-java/commons-compress is bumped, see bug #591696
COMMON_DEPS="
- dev-java/absolutelayout
+ dev-java/absolutelayout:0
dev-java/jama:0
dev-java/commons-compress
dev-java/commons-logging:0
>=dev-java/commons-io-2.1:1
- dev-java/commons-math:2
- dev-java/commons-jexl:2
- dev-java/jcommon:1.0
- dev-java/jfreechart:1.0
+ dev-java/commons-math:*
+ dev-java/commons-jexl:*
+ dev-java/jcommon:*
+ dev-java/jfreechart:*
dev-java/jlfgr:0
dev-java/log4j:0
- dev-java/gson:2.2.2
+ dev-java/gson:*
dev-java/guava:*
- dev-java/swing-layout:1
+ dev-java/swing-layout:*
dev-java/jgrapht:0
- dev-java/junit:4"
+ dev-java/junit:*"
DEPEND=">=virtual/jdk-1.7
app-arch/unzip
