commit: a5b2a38c915c223d7c2712301c6802b3e6c3389f
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Dec 9 16:23:50 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Dec 9 16:23:50 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a5b2a38c
sci-biology/jellyfish: version bump; respect sse CPU USE flag
Package-Manager: portage-2.3.3
sci-biology/jellyfish/jellyfish-1.1.11.ebuild | 14 +++++++++++++-
sci-biology/jellyfish/jellyfish-2.1.3.ebuild | 14 +++++++++++++-
sci-biology/jellyfish/jellyfish-2.1.4.ebuild | 14 +++++++++++++-
.../{jellyfish-2.1.3.ebuild => jellyfish-2.2.0.ebuild} | 14 +++++++++++++-
4 files changed, 52 insertions(+), 4 deletions(-)
diff --git a/sci-biology/jellyfish/jellyfish-1.1.11.ebuild
b/sci-biology/jellyfish/jellyfish-1.1.11.ebuild
index acb7729..9475622 100644
--- a/sci-biology/jellyfish/jellyfish-1.1.11.ebuild
+++ b/sci-biology/jellyfish/jellyfish-1.1.11.ebuild
@@ -4,6 +4,8 @@
EAPI=6
+inherit eutils flag-o-matic
+
DESCRIPTION="k-mer counter within reads for assemblies"
HOMEPAGE="http://www.cbcb.umd.edu/software/jellyfish";
SRC_URI="http://www.cbcb.umd.edu/software/jellyfish/jellyfish-1.1.11.tar.gz
@@ -16,12 +18,22 @@
SRC_URI="http://www.cbcb.umd.edu/software/jellyfish/jellyfish-1.1.11.tar.gz
LICENSE="GPL-3+ BSD"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE=""
+IUSE="cpu_flags_x86_sse"
DEPEND=""
DEPEND="${RDEPEND}
virtual/pkgconfig"
+src_prepare(){
+ # --with-sse enable SSE
+ # --with-half enable half float (16 bits)
+ # --with-int128 enable int128
+ local myconf
+ use cpu_flags_x86_sse && myconf+=( --with-sse )
+ econf econf ${myconf[@]}
+ eapply_user
+}
+
src_install(){
default
sed -e "s#jellyfish-${PV}#jellyfish#" -i
"${ED}/usr/$(get_libdir)"/pkgconfig/jellyfish-1.1.pc || die
diff --git a/sci-biology/jellyfish/jellyfish-2.1.3.ebuild
b/sci-biology/jellyfish/jellyfish-2.1.3.ebuild
index d38d7bb..7501aef 100644
--- a/sci-biology/jellyfish/jellyfish-2.1.3.ebuild
+++ b/sci-biology/jellyfish/jellyfish-2.1.3.ebuild
@@ -4,6 +4,8 @@
EAPI=6
+inherit eutils flag-o-matic
+
DESCRIPTION="k-mer counter within reads for assemblies"
HOMEPAGE="http://www.genome.umd.edu/jellyfish.html";
SRC_URI="ftp://ftp.genome.umd.edu/pub/${PN}/${P}.tar.gz
@@ -14,12 +16,22 @@ SRC_URI="ftp://ftp.genome.umd.edu/pub/${PN}/${P}.tar.gz
LICENSE="GPL-3+ BSD"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE=""
+IUSE="cpu_flags_x86_sse"
DEPEND=""
DEPEND="${RDEPEND}
virtual/pkgconfig"
+src_prepare(){
+ # --with-sse enable SSE
+ # --with-half enable half float (16 bits)
+ # --with-int128 enable int128
+ local myconf
+ use cpu_flags_x86_sse && myconf+=( --with-sse )
+ econf econf ${myconf[@]}
+ eapply_user
+}
+
src_install(){
default
sed -e "s#jellyfish-${PV}#jellyfish#" -i
"${ED}/usr/$(get_libdir)"/pkgconfig/jellyfish-2.0.pc || die
diff --git a/sci-biology/jellyfish/jellyfish-2.1.4.ebuild
b/sci-biology/jellyfish/jellyfish-2.1.4.ebuild
index d38d7bb..7501aef 100644
--- a/sci-biology/jellyfish/jellyfish-2.1.4.ebuild
+++ b/sci-biology/jellyfish/jellyfish-2.1.4.ebuild
@@ -4,6 +4,8 @@
EAPI=6
+inherit eutils flag-o-matic
+
DESCRIPTION="k-mer counter within reads for assemblies"
HOMEPAGE="http://www.genome.umd.edu/jellyfish.html";
SRC_URI="ftp://ftp.genome.umd.edu/pub/${PN}/${P}.tar.gz
@@ -14,12 +16,22 @@ SRC_URI="ftp://ftp.genome.umd.edu/pub/${PN}/${P}.tar.gz
LICENSE="GPL-3+ BSD"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE=""
+IUSE="cpu_flags_x86_sse"
DEPEND=""
DEPEND="${RDEPEND}
virtual/pkgconfig"
+src_prepare(){
+ # --with-sse enable SSE
+ # --with-half enable half float (16 bits)
+ # --with-int128 enable int128
+ local myconf
+ use cpu_flags_x86_sse && myconf+=( --with-sse )
+ econf econf ${myconf[@]}
+ eapply_user
+}
+
src_install(){
default
sed -e "s#jellyfish-${PV}#jellyfish#" -i
"${ED}/usr/$(get_libdir)"/pkgconfig/jellyfish-2.0.pc || die
diff --git a/sci-biology/jellyfish/jellyfish-2.1.3.ebuild
b/sci-biology/jellyfish/jellyfish-2.2.0.ebuild
similarity index 72%
copy from sci-biology/jellyfish/jellyfish-2.1.3.ebuild
copy to sci-biology/jellyfish/jellyfish-2.2.0.ebuild
index d38d7bb..7501aef 100644
--- a/sci-biology/jellyfish/jellyfish-2.1.3.ebuild
+++ b/sci-biology/jellyfish/jellyfish-2.2.0.ebuild
@@ -4,6 +4,8 @@
EAPI=6
+inherit eutils flag-o-matic
+
DESCRIPTION="k-mer counter within reads for assemblies"
HOMEPAGE="http://www.genome.umd.edu/jellyfish.html";
SRC_URI="ftp://ftp.genome.umd.edu/pub/${PN}/${P}.tar.gz
@@ -14,12 +16,22 @@ SRC_URI="ftp://ftp.genome.umd.edu/pub/${PN}/${P}.tar.gz
LICENSE="GPL-3+ BSD"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE=""
+IUSE="cpu_flags_x86_sse"
DEPEND=""
DEPEND="${RDEPEND}
virtual/pkgconfig"
+src_prepare(){
+ # --with-sse enable SSE
+ # --with-half enable half float (16 bits)
+ # --with-int128 enable int128
+ local myconf
+ use cpu_flags_x86_sse && myconf+=( --with-sse )
+ econf econf ${myconf[@]}
+ eapply_user
+}
+
src_install(){
default
sed -e "s#jellyfish-${PV}#jellyfish#" -i
"${ED}/usr/$(get_libdir)"/pkgconfig/jellyfish-2.0.pc || die
