commit: d7a2a3ae8f4c468241ac6597f1bea2273b154a53 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Wed Dec 14 22:50:25 2016 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Thu Dec 15 08:02:19 2016 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d7a2a3ae
sci-biology/bamtools: Remove old Package-Manager: portage-2.3.3 Closes: https://github.com/gentoo/gentoo/pull/3120 sci-biology/bamtools/Manifest | 2 - sci-biology/bamtools/bamtools-1.0.2-r1.ebuild | 48 ---------------------- sci-biology/bamtools/bamtools-2.3.0.ebuild | 31 -------------- .../bamtools/files/bamtools-2.3.0-unbundle.patch | 23 ----------- 4 files changed, 104 deletions(-) diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest index fa04b1b..f276fed 100644 --- a/sci-biology/bamtools/Manifest +++ b/sci-biology/bamtools/Manifest @@ -1,3 +1 @@ -DIST bamtools-1.0.2.tar.gz 207523 SHA256 d3ca75d2bec531f15dbc400a76afbe48d47452ce05552c88943bbce81a0862d8 SHA512 1934d40d50f3fdf2b1fcacb8b59cf954a3c791d3095649ac4f1246563e9d8d4afe385e42a2c6c383f0bb519eede401d12c71203d279b33e01575222f9f84c244 WHIRLPOOL 9fb4d4feb3ff867866a96533231a1b8284fd5156ab142cad727d32f8f3c157e246cca59185c3bdc253b19bde2514404a7107a62443780b060f6e8f270622c990 -DIST bamtools-2.3.0.tar.gz 539446 SHA256 288046e6d5d41afdc5fce8608c5641cf2b8e670644587c1315b90bbe92f039af SHA512 432f66384cffc04ab6bc7dc66d8f7b79c1e468d0068db4cabb5cac05f9b6bef7968eff71ffb3ee51b84e23d9bb66a11ef267024138f40116c25e7f18e7210a5c WHIRLPOOL dd888f67c3d0b0ce2f5f2875e242e5df0d54cefd13693230b5f10eb57dd780304b601027cf65f6598a54061a7166903bf06c6c9a46939f6ce6bbb246cab89993 DIST bamtools-2.4.1.tar.gz 540482 SHA256 933a0c1a83c88c1dac8078c0c0e82f6794c75cb927265399404bc2cc2611204b SHA512 ee674014f27b2dc0aa7c0415e8654ee7c39cfdecafbd9983d970fad6ad29f070a7ff372ee05765956cf7c8f8bb3b9763b6e537e693a0d2d64680148b1a23cfee WHIRLPOOL 6ef73f0713ebf993123eac7095061e32fe6a53db383e28a5dd8967afee92fb211ce56611de9718ce4cce84bdee14157ff968e0a6edcaead4e06b44008b78b84c diff --git a/sci-biology/bamtools/bamtools-1.0.2-r1.ebuild b/sci-biology/bamtools/bamtools-1.0.2-r1.ebuild deleted file mode 100644 index dc1b60b..00000000 --- a/sci-biology/bamtools/bamtools-1.0.2-r1.ebuild +++ /dev/null @@ -1,48 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -inherit cmake-utils - -DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files" -HOMEPAGE="https://github.com/pezmaster31/bamtools"; -SRC_URI="mirror://github/pezmaster31/bamtools/"${P}".tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND=" - dev-libs/jsoncpp - sys-libs/zlib" -DEPEND="${RDEPEND}" - -src_prepare() { - sed \ - -e '/third_party/d' \ - -i src/CMakeLists.txt || die - rm -r src/third_party || die - - sed \ - -e 's:json.h:json/json.h:g' \ - -i src/toolkit/bamtools_filter.cpp || die - - cmake-utils_src_prepare -} - -src_install() { - local i - for i in bin/bamtools-${PV} lib/libbamtools.so.${PV} lib/libbamtools-utils.so.${PV}; do - TMPDIR="$(pwd)" scanelf -Xr $i || die - done - - dobin bin/bamtools - dolib.so lib/*so* - use static-libs && dolib.a lib/*a - insinto /usr/include/bamtools - doins include/api include/shared - dodoc README -} diff --git a/sci-biology/bamtools/bamtools-2.3.0.ebuild b/sci-biology/bamtools/bamtools-2.3.0.ebuild deleted file mode 100644 index b2d7d62..00000000 --- a/sci-biology/bamtools/bamtools-2.3.0.ebuild +++ /dev/null @@ -1,31 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -inherit cmake-utils - -DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files" -HOMEPAGE="https://github.com/pezmaster31/bamtools"; -SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="static-libs" - -DEPEND=" - >=dev-libs/jsoncpp-0.5.0-r1 - <dev-libs/jsoncpp-1 - sys-libs/zlib" -RDEPEND="${DEPEND}" - -PATCHES=( "${FILESDIR}"/${P}-unbundle.patch ) - -src_install() { - cmake-utils_src_install - if ! use static-libs; then - rm "${ED}"/usr/$(get_libdir)/*.a || die - fi -} diff --git a/sci-biology/bamtools/files/bamtools-2.3.0-unbundle.patch b/sci-biology/bamtools/files/bamtools-2.3.0-unbundle.patch deleted file mode 100644 index c07c59d..00000000 --- a/sci-biology/bamtools/files/bamtools-2.3.0-unbundle.patch +++ /dev/null @@ -1,23 +0,0 @@ ---- bamtools-2.3.0/src/api/CMakeLists.txt.ori 2013-08-27 18:00:43.000000000 +0200 -+++ bamtools-2.3.0/src/api/CMakeLists.txt 2013-08-27 18:00:47.000000000 +0200 -@@ -54,8 +54,8 @@ - target_link_libraries( BamTools-static ${APILibs} ) - - # set library install destinations --install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin") --install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools") -+install( TARGETS BamTools LIBRARY DESTINATION "lib${LIB_SUFFIX}" RUNTIME DESTINATION "bin") -+install( TARGETS BamTools-static ARCHIVE DESTINATION "lib${LIB_SUFFIX}") - - # export API headers - include(../ExportHeader.cmake) ---- bamtools-2.3.0/src/CMakeLists.txt.ori 2013-08-27 18:03:10.000000000 +0200 -+++ bamtools-2.3.0/src/CMakeLists.txt 2013-08-27 18:03:23.000000000 +0200 -@@ -6,7 +6,6 @@ - # ========================== - - add_subdirectory( api ) --add_subdirectory( third_party ) - add_subdirectory( toolkit ) - add_subdirectory( utils ) -
