commit:     5f3f4d9525b701b6643ecbdfa3835051201c6e25
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Feb 16 09:53:34 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Feb 16 09:53:34 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=5f3f4d95

sci-biology/freebayes: force compilation in a single thread as parallel build 
fails

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 sci-biology/freebayes/freebayes-9999.ebuild | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/sci-biology/freebayes/freebayes-9999.ebuild 
b/sci-biology/freebayes/freebayes-9999.ebuild
index b4eee4419..1b1eb89ed 100644
--- a/sci-biology/freebayes/freebayes-9999.ebuild
+++ b/sci-biology/freebayes/freebayes-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
@@ -84,6 +84,10 @@ RDEPEND="${DEPEND}
 
 # g++ -O3 -D_FILE_OFFSET_BITS=64 -g -I../ttmath -I../bamtools/src/ 
-I../vcflib/src/ -I../vcflib/tabixpp/ -I../vcflib/smithwaterman/ 
-I../vcflib/multichoose/ -I../vcflib/filevercmp/ -I../vcflib/tabixpp/htslib 
-I../SeqLib -I../SeqLib/htslib -c freebayes.cpp
 
+src_compile(){
+       emake -j1 # vcflib/smithwaterman/ sometimes does not compile
+}
+
 src_install(){
        dobin bin/freebayes bin/bamleftalign
 }

Reply via email to